View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_11 (Length: 355)
Name: NF19576_low_11
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 355
Target Start/End: Original strand, 12761627 - 12761971
Alignment:
| Q |
8 |
attatacttccagagtcactatttccattgttgttttgcttgcttcccttatcacaaatgttgttgcaaccaaagaaacaacaatatcagatgttgatct |
107 |
Q |
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| T |
12761627 |
attacacttccagagtcactatttccattgttgttttgcttgcttcccttatcacaaatgttgttgcaaccaaagaaacaacattatcagatgttgatct |
12761726 |
T |
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| Q |
108 |
tcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggattggatacagtggctccagagttagcagat |
207 |
Q |
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| T |
12761727 |
tcttgaatttcctcttaatttagagtacttggaggctgaattctttttatttggatcatttggtcatggattggatgcagtggctccagagttagcagat |
12761826 |
T |
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| Q |
208 |
ggtggaccctctcctattggtgccaaagtggccaaactgaaggaccgtaagatcaagcaaatcatatttgaatttggtttacaagaagttggacatttaa |
307 |
Q |
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| T |
12761827 |
ggtgggccctctcctattggtgccaaagtggccaaactgaaggatcgtaagatcaagcaaatcatatttgaatttggtttacaagaagttggacatttaa |
12761926 |
T |
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| Q |
308 |
ggttatctctctaatactttttaaatcttataatttgatcgtatatat |
355 |
Q |
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| T |
12761927 |
ggttttctct---atactttttaaatcttataatttgatcgtatatat |
12761971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 12770935 - 12771087
Alignment:
| Q |
94 |
tcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggattggatacagtggctc |
193 |
Q |
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| T |
12770935 |
tcagatgatgatcttcttgaatttcctcttaatttagaatatttggaagctgaattctttttatttggatcattaggtcatggattggatgtagttgctc |
12771034 |
T |
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| Q |
194 |
cagagttagcagatggtggaccctctcctattggtgccaaagtggccaaactg |
246 |
Q |
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| T |
12771035 |
cagagttagcagagggtggccctcctcctattggggccaaaatggccaaactg |
12771087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 12782912 - 12783059
Alignment:
| Q |
94 |
tcagatgttgatcttcttgaatttcctcttaacttagagtacttggaagctgaattctttttatttggatcatatggtcatggattggatacagtggctc |
193 |
Q |
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| T |
12782912 |
tcagatgttgatcttctcgaatttcctcttaatttagagtacttggaggctgaattctttttatttggatcattaggtcatggattggatgtagttgctc |
12783011 |
T |
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| Q |
194 |
cagagttagcagatggtggaccctctcctattggtgccaaagtggcca |
241 |
Q |
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| T |
12783012 |
cagagttagcagagggtggccctcctcctattggggcaaaagtggcca |
12783059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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