View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19576_low_14 (Length: 330)
Name: NF19576_low_14
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 1543767 - 1544067
Alignment:
| Q |
11 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543767 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
1543866 |
T |
|
| Q |
111 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcctcccaaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1543867 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggtggataccctccccacaacatgagtggacctcctcctcctcccaaca |
1543966 |
T |
|
| Q |
211 |
gtggatatcgtgctcctcaaaataactacccggggcaacaaaaccacatggcagggatgtctccaaatgctggttggtcaaataatcagtagactctcgt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543967 |
gtggatatcgtgctcctcaaaataactactcggggcaacaaaaccacatggcagggatgtctccaaatgctggttggtcaaataatcagtagactctcgt |
1544066 |
T |
|
| Q |
311 |
c |
311 |
Q |
| |
|
| |
|
|
| T |
1544067 |
c |
1544067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 114 - 308
Target Start/End: Original strand, 32421641 - 32421859
Alignment:
| Q |
114 |
ggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctc--------------- |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| ||||| |||| |
|
|
| T |
32421641 |
ggatacgcccctccaaatcaaggtggatatgctcctccaaatgcaggtggtggataccctccccccaacatgagcggaccccctcctcctaacatgagca |
32421740 |
T |
|
| Q |
199 |
------ctcctcccaacagtggatatcgtgctcctcaaaataactacccggggcaacaaaacc---acatggcagggatgtctccaaatgctggttggtc |
289 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
32421741 |
gacctcctcctcccaacagtggatacggtgctcctcaaaataactacctggggcaacaaaaccagaacattgcagggatgcctccaaatgctggatggtc |
32421840 |
T |
|
| Q |
290 |
aaataatcagtagactctc |
308 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32421841 |
aaataatcagtagactctc |
32421859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 32421436 - 32421490
Alignment:
| Q |
11 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32421436 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctcccaacaat |
32421490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 32421524 - 32421610
Alignment:
| Q |
69 |
taccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| | ||||||||| |
|
|
| T |
32421524 |
taccctcccaacaatgctggcggataccctcctaacaatcaagctggatactcccctccaaatcaatctggatactcccctccaaat |
32421610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 32421611 - 32421658
Alignment:
| Q |
108 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
155 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
32421611 |
caagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 32425725 - 32425766
Alignment:
| Q |
270 |
tctccaaatgctggttggtcaaataatcagtagactctcgtc |
311 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
32425725 |
tctccaaatgcaggatgggcaaataatcagtagactctcgtc |
32425766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 32425686 - 32425738
Alignment:
| Q |
108 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
160 |
Q |
| |
|
||||||||| | ||| || |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
32425686 |
caagctggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcagg |
32425738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University