View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19576_low_15 (Length: 325)
Name: NF19576_low_15
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 84 - 314
Target Start/End: Complemental strand, 45619250 - 45619012
Alignment:
| Q |
84 |
atagggtaccgtttctaagttttctccataaaaatttagatgtatcatttaatgtgtctgatttctaatagatttgaccgaaagcgaaaaactaaatcaa |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
45619250 |
atagggtaccgtttctaagttttctccataaaaatttagatgtatcatttaatgtgtctgatttctaatagatttgactgaaagcgaaaaaccaaatcaa |
45619151 |
T |
|
| Q |
184 |
attgaaaaactatccgacc--------ttctgttcaaatccaaattgaatcgaagcaaattgaactagttgggttcgannnnnnnnnnnnnnnnnnaaaa |
275 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45619150 |
atcgaaaaactatccgaccttctccggttctgttcaaatccaaattgaatcgaagcaaattgaactagttgggttcgatttttaatttttaattttaaaa |
45619051 |
T |
|
| Q |
276 |
tccaatgaaccaaacttatactaacaccaccctcatatt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45619050 |
tccaatgaaccaaacttatactaacaccaccctcatatt |
45619012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 45620888 - 45620813
Alignment:
| Q |
21 |
agttatgacctggatttttaatctacttgtccttttattagtgggtaacatgataaacagtatatagggtaccgttt |
97 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45620888 |
agttatgacctggatttttaatccacttgtccttttattagtgggtaacatgataaacagtatata-ggtaccgttt |
45620813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University