View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_16 (Length: 325)
Name: NF19576_low_16
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 10750093 - 10750224
Alignment:
| Q |
20 |
tttcacaattctacattctcatataataacgaggtttgttttcaagattcattcacatgcatggcattgttttggcttgttctgaattggtctttctttt |
119 |
Q |
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| T |
10750093 |
tttcacaattctacattctcatataataacgaggtttgttttcaagattcattcacatgcgtgacattgttttggcttgttctgaattggtctttctttt |
10750192 |
T |
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| Q |
120 |
ggtttcaaaaatatctgcatctgcatgcaaca |
151 |
Q |
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| T |
10750193 |
ggtttcaaaaatatctgcatctgcatgcaaca |
10750224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 186 - 303
Target Start/End: Original strand, 10750259 - 10750376
Alignment:
| Q |
186 |
aatgaaattgcaatggcatgaagttaacaacattgaatgtatcgctgtaaatttgaataaaaattcaatcattttcacattacaagtccctatactattc |
285 |
Q |
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| T |
10750259 |
aatgaaattgcaatggcatgaagttaacaacattgaatgtatcgctacaaatttgaataaaaatccaatctttttcacattacaagtccctatactattc |
10750358 |
T |
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| Q |
286 |
tgggtcaagctgattctg |
303 |
Q |
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| T |
10750359 |
tgggtcaagctgattctg |
10750376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 23272358 - 23272233
Alignment:
| Q |
20 |
tttcacaattctacattctcatataataacgaggtttgttttcaagattcattcacatgcatggcattgttttggcttgttctgaattggtctttctttt |
119 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
23272358 |
tttcacaat-ctacattctcatataataatgaggtttgttttcaagattcacacacatgtgtgacattgttttggcttgttctgaattggtctttctttt |
23272260 |
T |
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| Q |
120 |
ggtttcaaaaatatctgcatctgcatg |
146 |
Q |
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| T |
23272259 |
ggtttcaaaaatatatgcatttgcatg |
23272233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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