View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_low_19 (Length: 309)

Name: NF19576_low_19
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_low_19
NF19576_low_19
[»] chr8 (13 HSPs)
chr8 (2-165)||(4030184-4030347)
chr8 (216-283)||(4031577-4031644)
chr8 (164-220)||(4030387-4030443)
chr8 (9-93)||(15349463-15349547)
chr8 (210-267)||(4962161-4962221)
chr8 (205-265)||(15349244-15349304)
chr8 (208-267)||(12195683-12195742)
chr8 (208-267)||(12440111-12440170)
chr8 (47-92)||(12195893-12195938)
chr8 (208-265)||(12200703-12200760)
chr8 (47-92)||(12440321-12440366)
chr8 (208-265)||(12445131-12445188)
chr8 (121-161)||(15349389-15349429)
[»] chr2 (2 HSPs)
chr2 (1-165)||(29350924-29351088)
chr2 (164-219)||(29350829-29350884)
[»] chr3 (6 HSPs)
chr3 (177-304)||(11005540-11005667)
chr3 (178-304)||(11024116-11024242)
chr3 (178-304)||(11015104-11015230)
chr3 (29-158)||(47451323-47451452)
chr3 (189-270)||(47451524-47451605)
chr3 (47-86)||(11014935-11014974)
[»] chr4 (55 HSPs)
chr4 (205-305)||(48853002-48853102)
chr4 (189-267)||(48147337-48147415)
chr4 (189-266)||(49038502-49038579)
chr4 (189-270)||(49043792-49043873)
chr4 (189-265)||(7790441-7790517)
chr4 (192-267)||(45371701-45371776)
chr4 (6-96)||(45384290-45384380)
chr4 (6-89)||(45365620-45365703)
chr4 (195-266)||(48864395-48864466)
chr4 (188-267)||(48156052-48156131)
chr4 (3-92)||(7237147-7237235)
chr4 (189-261)||(7771760-7771832)
chr4 (189-265)||(7908663-7908739)
chr4 (1-73)||(48871154-48871226)
chr4 (1-73)||(48876458-48876530)
chr4 (1-73)||(48886840-48886912)
chr4 (196-267)||(7773456-7773527)
chr4 (189-276)||(49048179-49048266)
chr4 (195-265)||(7813838-7813908)
chr4 (205-267)||(7878742-7878804)
chr4 (189-267)||(45365844-45365922)
chr4 (205-267)||(45384532-45384594)
chr4 (208-261)||(7237386-7237439)
chr4 (207-256)||(37826632-37826681)
chr4 (1-98)||(48155818-48155915)
chr4 (174-265)||(48903316-48903404)
chr4 (205-265)||(7766003-7766063)
chr4 (186-265)||(48870921-48871000)
chr4 (186-265)||(48876225-48876304)
chr4 (195-265)||(7800998-7801068)
chr4 (9-87)||(7801217-7801295)
chr4 (9-87)||(7823549-7823627)
chr4 (187-265)||(48886607-48886685)
chr4 (26-87)||(7908876-7908937)
chr4 (205-265)||(7786825-7786885)
chr4 (20-87)||(7814057-7814124)
chr4 (1-79)||(45371466-45371544)
chr4 (20-78)||(48863848-48863906)
chr4 (207-265)||(50666676-50666734)
chr4 (217-278)||(48861636-48861697)
chr4 (174-267)||(48899099-48899192)
chr4 (1-158)||(48903461-48903618)
chr4 (1-70)||(49040553-49040622)
chr4 (1-81)||(37826388-37826468)
chr4 (118-158)||(45371589-45371629)
chr4 (191-251)||(48735037-48735097)
chr4 (216-264)||(50672860-50672908)
chr4 (2-81)||(7790660-7790739)
chr4 (9-80)||(48147116-48147187)
chr4 (12-82)||(7771974-7772044)
chr4 (1-87)||(7787074-7787160)
chr4 (129-165)||(7766180-7766216)
chr4 (129-165)||(7787002-7787038)
chr4 (195-263)||(7823332-7823400)
chr4 (122-158)||(49043684-49043720)
[»] chr6 (4 HSPs)
chr6 (189-270)||(21016177-21016258)
chr6 (219-259)||(14197337-14197377)
chr6 (12-95)||(21016393-21016476)
chr6 (205-262)||(21979268-21979325)
[»] chr5 (9 HSPs)
chr5 (180-267)||(9120122-9120209)
chr5 (6-73)||(9120357-9120424)
chr5 (205-266)||(42561973-42562034)
chr5 (174-267)||(29688488-29688581)
chr5 (191-262)||(29696600-29696671)
chr5 (222-267)||(179417-179462)
chr5 (9-151)||(29688642-29688787)
chr5 (193-267)||(29712069-29712143)
chr5 (122-158)||(9120272-9120308)
[»] chr7 (1 HSPs)
chr7 (205-267)||(48884183-48884245)
[»] chr1 (8 HSPs)
chr1 (2-79)||(24340999-24341076)
chr1 (2-79)||(24353364-24353441)
chr1 (205-260)||(24367531-24367586)
chr1 (205-267)||(24416137-24416199)
chr1 (207-267)||(24310575-24310635)
chr1 (205-266)||(24340771-24340832)
chr1 (205-266)||(24353136-24353197)
chr1 (205-257)||(24323139-24323191)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 4030184 - 4030347
Alignment:
Q  2 ctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatccaaatcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  4030184 ctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaagcagagactctgtgtacatggtcacttgagatccaaatcca 4030283  T
Q  102 tcatcgtaatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtac 165  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030284 tcattgtaatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtac 4030347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 4031577 - 4031644
Alignment:
Q  216 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcccccacgg 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcccccacgg 4031644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 4030387 - 4030443
Alignment:
Q  164 acattggggcaaagtacttaatggaaatgccatcaatagacagaacaagagtcttag 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4030387 acattggggaaaagtacttaatggaaatgccatcaatagacagaacaagagtcttag 4030443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 15349547 - 15349463
Alignment:
Q  9 ttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatc 93  Q
    |||||||||| ||| || |||||||| |||||||| | |||||||||||||| |||||||||||| |||||  ||||||| ||||    
T  15349547 ttcttgtttgcgtcgtcctcttaagcctgctcattatcaccagggagtgaaagcagagactctgtatacatagccacttgggatc 15349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 4962161 - 4962221
Alignment:
Q  210 aagagtcttagtccaagacga---atgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||||||||| |||||   ||||| ||||||||||||||| |||||||||||||||    
T  4962161 aagagtcttagtccacgacgacgaatgcagtttgtattctttcatcacccatatttcaact 4962221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 15349304 - 15349244
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||||| |||| |||||||| || | || ||||||||||||||| |||||||||||||    
T  15349304 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 12195742 - 12195683
Alignment:
Q  208 acaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||||||||||||||||| || ||   |||||||||||||||  ||||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12195683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 12440170 - 12440111
Alignment:
Q  208 acaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||||||||||||||||| || ||   |||||||||||||||  ||||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12440111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 12195938 - 12195893
Alignment:
Q  47 accagggagtgaaatcagagactctgtgtacatgaccacttgagat 92  Q
    |||||||||||||| |||||||||||| |||||| |||||| ||||    
T  12195938 accagggagtgaaagcagagactctgtatacatggccacttcagat 12195893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 12200760 - 12200703
Alignment:
Q  208 acaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 12440366 - 12440321
Alignment:
Q  47 accagggagtgaaatcagagactctgtgtacatgaccacttgagat 92  Q
    |||||||||||||| |||||||||||| |||||| |||||| ||||    
T  12440366 accagggagtgaaagcagagactctgtatacatggccacttcagat 12440321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 12445188 - 12445131
Alignment:
Q  208 acaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 15349429 - 15349389
Alignment:
Q  121 gctctagcaactgtcctttgtcatcatacttcaccaattca 161  Q
    |||||| |||||| || ||||||||||||||||||||||||    
T  15349429 gctctaacaactgcccattgtcatcatacttcaccaattca 15349389  T

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Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 29351088 - 29350924
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatccaaatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||| |||||||||||||||  |||||| ||||    
T  29351088 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaagcatagactctctgtacatgaccacttcggatccacatcc 29350989  T
Q  101 atcatcgtaatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtac 165  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29350988 atcattgtaatagcagcgatgctctagcaactgtcctttgtcataatacttcaccaattcagtac 29350924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 29350884 - 29350829
Alignment:
Q  164 acattggggcaaagtacttaatggaaatgccatcaatagacagaacaagagtctta 219  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  29350884 acattggggcaaaatacttattggaaatgccatcaatagacagaacaagagtctta 29350829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 304
Target Start/End: Original strand, 11005540 - 11005667
Alignment:
Q  177 gtacttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcc 276  Q
    ||||| |||| |||||||||||||||| |  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |  |||||    
T  11005540 gtactgaatgcaaatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcc 11005639  T
Q  277 cccacggcccagagactaagaaattctc 304  Q
    ||||  ||||| ||||||||||||||||    
T  11005640 cccatagcccatagactaagaaattctc 11005667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 11024116 - 11024242
Alignment:
Q  178 tacttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatccc 277  Q
    |||| |||| |||||  ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||| |||    
T  11024116 tactgaatgtaaatgtaatcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgttacacccc 11024215  T
Q  278 ccacggcccagagactaagaaattctc 304  Q
    |||  ||||| ||||| ||||||||||    
T  11024216 ccatagcccatagactgagaaattctc 11024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 11015104 - 11015230
Alignment:
Q  178 tacttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatccc 277  Q
    |||| |||||||||| |||||||||| || |||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||| |  |||||     
T  11015104 tactcaatggaaatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcct 11015203  T
Q  278 ccacggcccagagactaagaaattctc 304  Q
    |||  ||||| ||||| ||||||||||    
T  11015204 ccatagcccatagacttagaaattctc 11015230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 47451323 - 47451452
Alignment:
Q  29 ttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatccaaatccatcatcgtaatagcagcgatgctctagc 128  Q
    ||||||||||||||||| ||| || ||||||| |||||||||||||||||| ||||||||  ||||| ||  ||| |   ||||| | |||||||||| |    
T  47451323 ttaagcttgctcattgtcaccgggaagtgaaagcagagactctgtgtacataaccacttggcatccacatggatcgttacaataggaacgatgctctaac 47451422  T
Q  129 aactgtcctttgtcatcatacttcaccaat 158  Q
    |||||||||||||||| |||||| ||||||    
T  47451423 aactgtcctttgtcattatacttaaccaat 47451452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 47451524 - 47451605
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactata 270  Q
    ||||||||||||||  ||||||||||||||   |||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  47451524 aatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactata 47451605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 11014935 - 11014974
Alignment:
Q  47 accagggagtgaaatcagagactctgtgtacatgaccact 86  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  11014935 accagggagtgaaagcagagactctgtgtacataaccact 11014974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 48853102 - 48853002
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcccccacggcccagagactaagaaattctc 304  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| || ||||||||| | |||| | ||| ||||||||||    
T  48853102 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatgacccatatacttagaaattctc 48853003  T
Q  305 t 305  Q
    |    
T  48853002 t 48853002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 48147337 - 48147415
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  48147337 aatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 49038502 - 49038579
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 266  Q
    |||||||  |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  49038502 aatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 49043792 - 49043873
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactata 270  Q
    |||| |||||||||| | |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  49043792 aatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactata 49043873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 7790517 - 7790441
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  7790517 aatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 45371701 - 45371776
Alignment:
Q  192 gccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45371701 gccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaact 45371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 45384290 - 45384380
Alignment:
Q  6 ttcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatccaa 96  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||  |||||||  ||||||||||| |||| | |||||||||||||||    
T  45384290 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagactctgtatacacggccacttgagatccaa 45384380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 45365620 - 45365703
Alignment:
Q  6 ttcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttga 89  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| ||||| | || ||||||||| |||||| ||||||||    
T  45365620 ttcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccaggaagtgacagcaaagactctgtatacatggccacttga 45365703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  195 atcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 266  Q
    ||||||||  ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 48156052 - 48156131
Alignment:
Q  188 aaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||||||||||||  || |||||||| ||||||||||| ||||||| ||||||||| ||||| |||||||||||||||    
T  48156052 aaatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaact 48156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 7237147 - 7237235
Alignment:
Q  3 tcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagat 92  Q
    ||||| |||||||||| |||||||| |||||| |||||||||| |||| ||||||||| |||||||||||| |||||||| |||| ||||    
T  7237147 tcattgttcttgtttgtgtcatctt-ttaagcatgctcattgtcaccaaggagtgaaagcagagactctgtatacatgacaacttcagat 7237235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 7771832 - 7771760
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatt 261  Q
    |||| |||||| ||| ||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||    
T  7771832 aatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 7908739 - 7908663
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    |||| |||||| ||| ||||||||||| ||| ||||||| ||||||| ||||||||||||||| |||||||||||||    
T  7908739 aatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48871226 - 48871154
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgt 73  Q
    |||||||||||||||||| |||| |||||||| | |||||||||| |||||||||||||| || |||||||||    
T  48871226 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgt 48871154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48876530 - 48876458
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgt 73  Q
    |||||||||||||||||| |||| |||||||| | |||||||||| |||||||||||||| || |||||||||    
T  48876530 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgt 48876458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48886912 - 48886840
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgt 73  Q
    |||||||||||||||||| |||| |||||||| | |||||||||| |||||||||||||| || |||||||||    
T  48886912 cctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactctgt 48886840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 7773456 - 7773527
Alignment:
Q  196 tcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||| ||| ||||||||||  ||| ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  7773456 tcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaact 7773527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 49048179 - 49048266
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcc 276  Q
    |||| ||||| |||| | ||||| |||||||||||| |||||||||| ||| || |||||||| |||||||||||||||||| |||||    
T  49048179 aatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcatcc 49048266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  195 atcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||| ||| ||||||||||| ||| ||||||||||||||| ||||||||||||||  |||||||||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 7878804 - 7878742
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaact 7878742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 45365844 - 45365922
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||||||||  |||||  ||||||| |||||||||||| ||| ||| ||||||||||| |||||||||||||||    
T  45365844 aatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaact 45365922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 45384532 - 45384594
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||| ||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 7237386 - 7237439
Alignment:
Q  208 acaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatt 261  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  207 aacaagagtcttagtccaagacgaatgcattttgtattctttcataaccc 256  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 48155818 - 48155915
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatccaaat 98  Q
    |||||||||||||||||| |   |||||||| |||||| |||||| |||||||||||||| || ||||||||| |||| |  |||||| |||||||||    
T  48155818 cctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacacggtcacttgggatccaaat 48155915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 48903404 - 48903316
Alignment:
Q  174 aaagtacttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    |||||||||  |||||||||||   ||||||||||||  | | |||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  48903404 aaagtacttggtggaaatgcca---atagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||| |||||||||||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 48871000 - 48870921
Alignment:
Q  186 ggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||| |||||| ||| |||||||||||||| ||||||||||| | || ||||||||| ||||| ||||| |||||||    
T  48871000 ggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 48876304 - 48876225
Alignment:
Q  186 ggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||| |||||| ||| |||||||||||||| ||||||||||| | || ||||||||| ||||| ||||| |||||||    
T  48876304 ggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48876225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  195 atcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||| ||| ||||||||||| ||| ||||||||||||||| |||||| |||||||  |||||||||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 7801295 - 7801217
Alignment:
Q  9 ttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccactt 87  Q
    |||||||||  ||||||||||||| ||| ||||||||  ||||||||||||| ||||||||| || |||||||| ||||    
T  7801295 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacatgacaactt 7801217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 7823627 - 7823549
Alignment:
Q  9 ttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccactt 87  Q
    |||||||||  ||||||||||||| ||| ||||||||  ||||||||||||| ||||||||| || |||||||| ||||    
T  7823627 ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacatgacaactt 7823549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 48886685 - 48886607
Alignment:
Q  187 gaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    |||||| |||||| ||| |||||||||||||| ||||||||||| | || ||||||||| ||||| ||||| |||||||    
T  48886685 gaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 7908937 - 7908876
Alignment:
Q  26 ttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccactt 87  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||| || |||||||| ||||    
T  7908937 ttcttaaacttgctcattgtcaccagggagtgaaagcagagactcggtatacatgacaactt 7908876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||||||||||| |||||||  ||||||  |||||||||||||| |||||||||||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 7814124 - 7814057
Alignment:
Q  20 gtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccactt 87  Q
    ||||||||||||| ||| ||||||||  ||||||||||||| ||||||||| || |||||||| ||||    
T  7814124 gtcatcttcttaaacttactcattgtccccagggagtgaaagcagagactcggtatacatgacaactt 7814057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 45371466 - 45371544
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacat 79  Q
    |||||||| |||||| || | |||||||||||||||| |||||||  | || |||||||| |||||||||||| |||||    
T  45371466 cctcattcatcttgtctgtgccatcttcttaagcttgatcattgtcgctagagagtgaaagcagagactctgtatacat 45371544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 48863906 - 48863848
Alignment:
Q  20 gtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtaca 78  Q
    |||||||||||||||||||||| ||| |  ||||||||||| |||||||||||| ||||    
T  48863906 gtcatcttcttaagcttgctcactgtcattagggagtgaaagcagagactctgtataca 48863848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 50666734 - 50666676
Alignment:
Q  207 aacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 265  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| ||| ||||||| |||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaa 50666676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 48861697 - 48861636
Alignment:
Q  217 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaactataacatcccc 278  Q
    |||||||||||| |||||| |||||||||||| || ||||||||||||| | || |||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtatcatcccc 48861636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 48899192 - 48899099
Alignment:
Q  174 aaagtacttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||| || ||| ||||||||||||||  ||||||||||||   |||||||| || |  | ||| ||||||||||| |||||||||||||||    
T  48899192 aaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaact 48899099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 48903618 - 48903461
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatccaaatcc 100  Q
    ||||||||||||| |||  | ||||||||||| |||||| | ||| ||||||||||||||  |||||||||   |||| | ||||||| ||||||  |      
T  48903618 cctcattcttcttatttatgccatcttcttaaacttgcttaatgtcaccagggagtgaaaatagagactctacatacaaggccacttgggatccatgtag 48903519  T
Q  101 atcatcgtaatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaat 158  Q
    ||| |     ||| || ||| |||||| |||||||||||||||| |||||||||||||    
T  48903518 atccttaccgtaggagtgatactctaggaactgtcctttgtcattatacttcaccaat 48903461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 49040553 - 49040622
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactc 70  Q
    |||||||||||||||||| | |||||||||||||||||| | ||| |   |||||||||| |||||||||    
T  49040553 cctcattcttcttgtttgtgccatcttcttaagcttgctaactgtcattggggagtgaaagcagagactc 49040622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37826388 - 37826468
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatga 81  Q
    ||||||||||||||||||  |||||||||||| |||||||   || | |||||| ||||| ||||||||| || |||||||    
T  37826388 cctcattcttcttgtttgtatcatcttcttaaacttgctctccgtcaacagggaatgaaagcagagactccgtatacatga 37826468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 45371589 - 45371629
Alignment:
Q  118 gatgctctagcaactgtcctttgtcatcatacttcaccaat 158  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  45371589 gatgctctagaaactgtccattgtcatcatacttcaccaat 45371629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 48735037 - 48735097
Alignment:
Q  191 tgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcat 251  Q
    ||||||||| ||||| | || |||| |||||||||||||||| || |||||||||||||||    
T  48735037 tgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcat 48735097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 50672908 - 50672860
Alignment:
Q  216 cttagtccaagacgaatgcattttgtattctttcataacccatatttca 264  Q
    ||||||||| |||||||||| |||||||| |||||| ||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 7790739 - 7790660
Alignment:
Q  2 ctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatga 81  Q
    |||||| || ||||||| | ||||||||||| | |||||||||| |||| | ||||||| |||||| ||||| |||||||    
T  7790739 ctcattgtttttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtatacatga 7790660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 48147116 - 48147187
Alignment:
Q  9 ttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatg 80  Q
    |||||||||| |||||||||||| | | || |||||| || ||||||||||| ||||||||| || ||||||    
T  48147116 ttcttgtttgtgtcatcttcttagggtagcacattgtcactagggagtgaaagcagagactcagtatacatg 48147187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 7772044 - 7771974
Alignment:
Q  12 ttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgac 82  Q
    ||||||| | ||||||||||| | |||||||||| |||| | ||||||| |||||| ||||| ||||||||    
T  7772044 ttgtttgtgacatcttcttaatcatgctcattgtcaccaagtagtgaaagcagagattctgtatacatgac 7771974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7787160 - 7787074
Alignment:
Q  1 cctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccactt 87  Q
    ||||||| ||||||| || ||||||||||||| | ||||||| || ||| | ||||||||  ||||||||||| |||| ||| ||||    
T  7787160 cctcattgttcttgtctgtgtcatcttcttaaacatgctcatcgtcaccggagagtgaaagtagagactctgtatacacgacaactt 7787074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 7766216 - 7766180
Alignment:
Q  129 aactgtcctttgtcatcatacttcaccaattcagtac 165  Q
    |||||||||||||||| |||||||||||||| |||||    
T  7766216 aactgtcctttgtcattatacttcaccaatttagtac 7766180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 7787038 - 7787002
Alignment:
Q  129 aactgtcctttgtcatcatacttcaccaattcagtac 165  Q
    |||||||||||||||| |||||||||||||| |||||    
T  7787038 aactgtcctttgtcattatacttcaccaatttagtac 7787002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  195 atcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttc 263  Q
    ||||| ||| ||||||||||| ||| |||||||| |||||| |||||| ||||| |  |||||||||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 49043684 - 49043720
Alignment:
Q  122 ctctagcaactgtcctttgtcatcatacttcaccaat 158  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  49043684 ctctagaaactgtcctttttcatcatacttcaccaat 49043720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 21016258 - 21016177
Alignment:
Q  189 aatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaactata 270  Q
    |||| |||||||||| | |  |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  21016258 aatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactata 21016177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  219 agtccaagacgaatgcattttgtattctttcataacccata 259  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 21016476 - 21016393
Alignment:
Q  12 ttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacatgaccacttgagatcca 95  Q
    ||||||| ||||||||||||| |||| || |||| | |||||||||||| || ||||||||| ||||   ||||| ||||||||    
T  21016476 ttgtttgtgtcatcttcttaatcttggtcgttgtcatcagggagtgaaagcaaagactctgtatacacagccactcgagatcca 21016393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 21979268 - 21979325
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatattt 262  Q
    ||||||||  ||||| ||||||| ||| ||| ||||||||||||||| ||||||||||    
T  21979268 agaacaagtttcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 9120209 - 9120122
Alignment:
Q  180 cttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||| |||||||||| |||||||||| ||||||||| ||  ||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  9120209 cttagtggaaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaact 9120122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 9120424 - 9120357
Alignment:
Q  6 ttcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgt 73  Q
    ||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||    
T  9120424 ttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaaagcagagactctgt 9120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 42561973 - 42562034
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 266  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||| |||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 29688581 - 29688488
Alignment:
Q  174 aaagtacttaatggaaatgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||| | ||||| |||| || ||| ||| ||||| |||||||| ||||||||||| ||||  ||||||| |||||| |||||||||||||||    
T  29688581 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaact 29688488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 29696671 - 29696600
Alignment:
Q  191 tgccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatattt 262  Q
    ||||||||| |||||| |||||||||||||||||||| || ||||  ||||||| || ||| ||||||||||    
T  29696671 tgccatcaaaagacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 179462 - 179417
Alignment:
Q  222 ccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaact 179417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 29688787 - 29688642
Alignment:
Q  9 ttcttgtttgagtcatcttcttaagcttgctcattgttacca---gggagtgaaatcagagactctgtgtacatgaccacttgagatccaaatccatcat 105  Q
    ||||||| || ||||||||||||||| || ||| ||| ||||   || ||||||| |||||| ||||| ||||| |||||| | |||||| || |||  |    
T  29688787 ttcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggt 29688688  T
Q  106 cgtaatagcagcgatgctctagcaactgtcctttgtcatcatactt 151  Q
    |  | ||| || |||||||||||| ||||||||| |||| ||||||    
T  29688687 ccgagtaggagtgatgctctagcagctgtcctttatcattatactt 29688642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 29712069 - 29712143
Alignment:
Q  193 ccatcaatagacagaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||| ||||| ||||||||||||||||||||| ||   ||  ||||||| || ||| |||||||||||||||    
T  29712069 ccatcaaaagacaaaacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaact 29712143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 9120308 - 9120272
Alignment:
Q  122 ctctagcaactgtcctttgtcatcatacttcaccaat 158  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  9120308 ctctatcaactgtcctttgtcattatacttcaccaat 9120272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 48884245 - 48884183
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||| |||||||||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaact 48884183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 24341076 - 24340999
Alignment:
Q  2 ctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacat 79  Q
    ||||||||||||||||| | ||||||||||||||| |||||||| || ||||||||||| || |||||| || |||||    
T  24341076 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacat 24340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 24353441 - 24353364
Alignment:
Q  2 ctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaatcagagactctgtgtacat 79  Q
    ||||||||||||||||| | ||||||||||||||| |||||||| || ||||||||||| || |||||| || |||||    
T  24353441 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactccgtatacat 24353364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 24367586 - 24367531
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatat 260  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 24416199 - 24416137
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||||| ||||||||||| || |||  ||||||||||||||| |||||||| ||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaact 24416137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 24310635 - 24310575
Alignment:
Q  207 aacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 267  Q
    ||||||||| ||| ||||||| || |||| ||||||||||||||| |||||||| ||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaact 24310575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 24340832 - 24340771
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 266  Q
    ||||||||||| ||||||||||| || |||| ||| ||||||||||| ||||| || |||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 24353197 - 24353136
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 266  Q
    ||||||||||| ||||||||||| || |||| ||| ||||||||||| ||||| || |||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 24323191 - 24323139
Alignment:
Q  205 agaacaagagtcttagtccaagacgaatgcattttgtattctttcataaccca 257  Q
    ||||||||||| |||||| |||| || |||| ||||||||||||||| |||||    
T  24323191 agaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

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