View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_20 (Length: 300)
Name: NF19576_low_20
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 12762119 - 12762396
Alignment:
| Q |
8 |
tgcctttggaaaatctctacaccctccttttgatccttatgcaaatgatatcaactttttgcttgcatcttatctaattccttatgttggacttactgga |
107 |
Q |
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| T |
12762119 |
tgcctttggaaaacctctacaccctccttttgatccttatgcaaatgatatcaactttttgcttgcatcttatctaattccttatgttggccttactgga |
12762218 |
T |
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| Q |
108 |
tacgttggaaccaatccacacctccaaaatgctgcttccagacaggtataatagcctcaaacacaacctattcaaatcatcattttccaattgcaattat |
207 |
Q |
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| T |
12762219 |
tatgttggaaccaatccacacctccaaaatgctgcttccagacaggtataatagcctcaaacacaacctaaggaaatcatcattttctaattgcaattat |
12762318 |
T |
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| Q |
208 |
gtgattaataatggtgcatgtattttatcagttagttgcaggccttctaggagtagaggcaggccaagatgcagttat |
285 |
Q |
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| T |
12762319 |
gtgattaataatggtgcatgtattttatcagttagttgcaggccttctaggagtagaggcaggtcaagatgcagttat |
12762396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 12771321 - 12771460
Alignment:
| Q |
6 |
agtgcctttggaaaatctctacaccctccttttgatccttatgcaaatgatatcaactttttgcttgcatcttatctaattccttatgttggacttactg |
105 |
Q |
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| T |
12771321 |
agtgcctttggaaaacctctacacccaccttttgatccttatgcaaatgatgtcaactttctgcttgcatcttatgtgattccttatgttggtcttaccg |
12771420 |
T |
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| Q |
106 |
gatacgttggaaccaatccacacctccaaaatgctgcttc |
145 |
Q |
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| T |
12771421 |
gctatgttggcgccaatccaaacctgcaaaatgctacttc |
12771460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 12783390 - 12783510
Alignment:
| Q |
6 |
agtgcctttggaaaatctctacaccctccttttgatccttatgcaaatgatatcaactttttgcttgcatcttatctaattccttatgttggacttactg |
105 |
Q |
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|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| | || ||||||| ||| | |||||||||||||| ||||||| |
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| T |
12783390 |
agtgcctttggacatcctcttcaccctccttttgatccttatgcaaatgatatcaactatctgattgcatcatatgtgattccttatgttggtcttactg |
12783489 |
T |
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| Q |
106 |
gatacgttggaaccaatccac |
126 |
Q |
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| T |
12783490 |
gttatgttggagccaatccac |
12783510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 12783612 - 12783683
Alignment:
| Q |
213 |
taataatggtgcatgtattttatcagttagttgcaggccttctaggagtagaggcaggccaagatgcagttat |
285 |
Q |
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| T |
12783612 |
taataatgttgcatgtatttaa-cagctagttgcaggccttctaggagtagaagcaggccaagatgcagttat |
12783683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 12771768 - 12771827
Alignment:
| Q |
226 |
tgtattttatcagttagttgcaggccttctaggagtagaggcaggccaagatgcagttat |
285 |
Q |
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| T |
12771768 |
tgtattttaacagctagttgcaggccttctaggagtggaatcaggccaagatgcagttat |
12771827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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