View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_21 (Length: 290)
Name: NF19576_low_21
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 55060815 - 55061088
Alignment:
| Q |
2 |
aaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcg |
101 |
Q |
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| T |
55060815 |
aaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcg |
55060914 |
T |
|
| Q |
102 |
aaaaccaaaaggatctctgacaacaacaagtttatctttagtaacaaacacaattgaataagcacctttaactttttcacacgcttcaacaattatcgct |
201 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55060915 |
aaaaccaaaaggatctctgacaacaaaaagtttatcttcagtaacaaacacaattgaataagcacctttaactttttcacacgcttcaacaattctcgct |
55061014 |
T |
|
| Q |
202 |
at-aaaaggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatcagaagtagtgttgaaaattg |
274 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55061015 |
ataaaaaggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatcagaagtagtgttgaaaattg |
55061088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 27357010 - 27357269
Alignment:
| Q |
13 |
tcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaag |
112 |
Q |
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|||||||||||||||||||||||||| ||||| || || |||||||||||||||| || ||||||||| || |||||||||| ||| | ||| ||||| | |
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| T |
27357010 |
tcataagtagcttcaatcaaatcaagagcacaagtctcagaagcaaaaacaacagcaccattacttctcctccccataaccaaaggcctaaacccaaatg |
27357109 |
T |
|
| Q |
113 |
gatctctgacaacaacaagtttatctttagtaacaaacacaattgaataagcacctttaactttttcacacgcttcaacaattatcgctataaaaggtct |
212 |
Q |
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|||| || ||| ||||||| ||||| | ||||||||||||||| ||||||||||||| || || ||||| || ||||||||| | ||||||||||| |
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| T |
27357110 |
gatccctcacagcaacaagcttatcctcagtaacaaacacaatcgaataagcaccttcaagcttctcacatgcatcaacaattcttaaaataaaaggtct |
27357209 |
T |
|
| Q |
213 |
atgatttgaagttgcaataagatgaagcaaaacttcagtatcagaagtagtgttgaaaat |
272 |
Q |
| |
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||| |||||||| ||||| | |||||| | |||||||||||||||||||||||| ||||| |
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| T |
27357210 |
atgctttgaagtagcaatcaaatgaagaacaacttcagtatcagaagtagtgttaaaaat |
27357269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 44334066 - 44334166
Alignment:
| Q |
55 |
gcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggat-ctctgacaacaacaa---gtttatctttagtaacaaac |
150 |
Q |
| |
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|||||||| ||||||| ||||| || |||| |||||||| ||||||||||| |||||||| |||||| | |||||| ||||||||| |||||||||| |
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| T |
44334066 |
gcaaaaactacagaaccgttactactacttcacataaccaaaggtcgaaaacaaaaaggatcctctgatagcaacaagttgtttatcttcagtaacaaac |
44334165 |
T |
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| Q |
151 |
a |
151 |
Q |
| |
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| |
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|
| T |
44334166 |
a |
44334166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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