View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_low_23 (Length: 259)

Name: NF19576_low_23
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_low_23
NF19576_low_23
[»] chr5 (5 HSPs)
chr5 (1-168)||(34451959-34452127)
chr5 (169-242)||(34452165-34452238)
chr5 (52-101)||(18551501-18551550)
chr5 (52-100)||(27731606-27731654)
chr5 (52-100)||(41015016-41015064)
[»] chr2 (1 HSPs)
chr2 (52-101)||(28044727-28044776)
[»] chr1 (1 HSPs)
chr1 (52-128)||(11766191-11766265)
[»] chr8 (1 HSPs)
chr8 (190-242)||(42388261-42388313)
[»] chr6 (3 HSPs)
chr6 (54-106)||(2457210-2457262)
chr6 (190-242)||(3189844-3189896)
chr6 (52-100)||(29404958-29405006)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 34451959 - 34452127
Alignment:
Q  1 ttgattaaatttcgatatgctatagtgttttctgtagctgatattttaca-tactttgtactaaattgcatatcgctaaacaatagcagttttttcaaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34451959 ttgattaaatttcgatatgctatagtgttttctgtagctgatattttacaatactttgtactaaattgcatatcgctaaacaatagcagttttttcgaat 34452058  T
Q  100 tcgactatgttatagctgctatttgacaacgtggattaggccacttctgaaattgtgtcgaaagagggt 168  Q
    | |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  34452059 ttgactatgttatagctgttatttgacaacgcggattgggccacttctgaaattgtgtcgaaagagggt 34452127  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 34452165 - 34452238
Alignment:
Q  169 caattgcagaatcaagttgaccggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagag 242  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34452165 caattgcagaatcaagctgaccggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagag 34452238  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 18551501 - 18551550
Alignment:
Q  52 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaattc 101  Q
    |||||||||||||||||||||| | |||||||||| |||| || ||||||    
T  18551501 actttgtactaaattgcatatctcgaaacaatagctgtttgttaaaattc 18551550  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 27731606 - 27731654
Alignment:
Q  52 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaatt 100  Q
    |||||||||||||| |||||||| ||||||||||| |||| || |||||    
T  27731606 actttgtactaaatagcatatcggtaaacaatagcggtttgtttaaatt 27731654  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 41015016 - 41015064
Alignment:
Q  52 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaatt 100  Q
    |||||||||||||| ||||||| |  |||||||||||||| ||||||||    
T  41015016 actttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 28044727 - 28044776
Alignment:
Q  52 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaattc 101  Q
    |||||||||||||| ||||||| | ||||||||| ||||| |||||||||    
T  28044727 actttgtactaaatcgcatatcacaaaacaatagtagtttattcaaattc 28044776  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 11766191 - 11766265
Alignment:
Q  52 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaattcgactatgttatagctgctatttgacaa 128  Q
    |||||||||||||| |||||||   ||||||||||  ||| ||||||||| |||||| ||||||  |||||||||||    
T  11766191 actttgtactaaatagcatatca--aaacaatagctatttgttcaaattctactatgatatagcctctatttgacaa 11766265  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 42388261 - 42388313
Alignment:
Q  190 cggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagag 242  Q
    ||||||| | ||| ||||||||||||||||| |||  ||||||||||||||||    
T  42388261 cggcatagctaaacccaccaacaaacacaattccacggaactcttgcaaagag 42388313  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 2457262 - 2457210
Alignment:
Q  54 tttgtactaaattgcatatcgctaaacaatagcagttttttcaaattcgacta 106  Q
    |||||||||||| ||||||| | |||||||||  |||||||||||||| ||||    
T  2457262 tttgtactaaatagcatatcacaaaacaatagtcgttttttcaaattccacta 2457210  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 3189896 - 3189844
Alignment:
Q  190 cggcataacaaaatccaccaacaaacacaatcccatagaactcttgcaaagag 242  Q
    ||||||| | ||| ||||||||||||||||| |||  ||||||||||||||||    
T  3189896 cggcatagctaaacccaccaacaaacacaattccacggaactcttgcaaagag 3189844  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 29404958 - 29405006
Alignment:
Q  52 actttgtactaaattgcatatcgctaaacaatagcagttttttcaaatt 100  Q
    ||||||||||||||  |||||||  ||||||||||| ||||||||||||    
T  29404958 actttgtactaaataacatatcgtgaaacaatagcaattttttcaaatt 29405006  T

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