View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_24 (Length: 259)
Name: NF19576_low_24
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_24 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 12611145 - 12610916
Alignment:
| Q |
11 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
110 |
Q |
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| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
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| Q |
111 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagaga |
210 |
Q |
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| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
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| Q |
211 |
agagtttgggtctattagagatggagaatc |
240 |
Q |
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| T |
12610945 |
agagtttggatctattggagatggagaatc |
12610916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 15884903 - 15885108
Alignment:
| Q |
11 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
110 |
Q |
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| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
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| Q |
111 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagaga |
210 |
Q |
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| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga |
15885102 |
T |
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| Q |
211 |
agagtt |
216 |
Q |
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|||||| |
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| T |
15885103 |
agagtt |
15885108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 12638145 - 12638017
Alignment:
| Q |
11 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
110 |
Q |
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|||| ||||||||| || || ||| | || ||||| ||||||||||| || | || ||||||||||||||| | | ||||||| | |||| ||||||| |
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| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
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| Q |
111 |
tgcaacaagggtcacccgtcaacatcact |
139 |
Q |
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| T |
12638045 |
cacaacaaggatcacccatcaacatcact |
12638017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 63224 - 63150
Alignment:
| Q |
65 |
ccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacccgtcaacatcact |
139 |
Q |
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| T |
63224 |
ccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcact |
63150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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