View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_25 (Length: 248)
Name: NF19576_low_25
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32783494 - 32783733
Alignment:
| Q |
1 |
tcttgcagtaactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctcccaaagcacgctaacatccatattag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
32783494 |
tcttgcagtaactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcacctcccaaagcatcctaacatccatattag |
32783593 |
T |
|
| Q |
101 |
taaatataaagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtc |
200 |
Q |
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||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32783594 |
taaatgtaaagtccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagcaggcaaaatgtc |
32783693 |
T |
|
| Q |
201 |
atcttctttttgaggtaaattccaaatttcactgtctctg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32783694 |
atcttctttttgaggtaaattccaaatttcactgtctctg |
32783733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 49352750 - 49352536
Alignment:
| Q |
26 |
cttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctcccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagag |
125 |
Q |
| |
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||||||||||||||||||| |||||||| |||||| |||||| ||| |||| ||||| ||||||| | ||||| ||| ||||| ||||| |||||| |
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| T |
49352750 |
cttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaagag |
49352651 |
T |
|
| Q |
126 |
agagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaa |
225 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
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| T |
49352650 |
agagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattccaa |
49352551 |
T |
|
| Q |
226 |
atttcactgtctctg |
240 |
Q |
| |
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|| |||||||||||| |
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| T |
49352550 |
atctcactgtctctg |
49352536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 49341388 - 49341164
Alignment:
| Q |
10 |
aactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctcccaaagcacgctaacatccatattagtaaatataa |
109 |
Q |
| |
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|||||||||||| || ||||||||||||||||| |||||||||| |||||| ||||| ||| |||| ||||| |||||||| | |||| ||||| || |
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| T |
49341388 |
aactgaatgctaatatcttccaaggttttacccatgtttggtggtggaagaaaaccaaatgccacccatagcacactaacatcaaaattaataaatggaa |
49341289 |
T |
|
| Q |
110 |
agtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttcttt |
209 |
Q |
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||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||| |
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| T |
49341288 |
agtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtcgtcatcttt |
49341191 |
T |
|
| Q |
210 |
ttgaggtaaattccaaatttcactgtc |
236 |
Q |
| |
|
||| ||||||| ||||||||||||||| |
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| T |
49341190 |
ttgtggtaaatcccaaatttcactgtc |
49341164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 19030731 - 19030658
Alignment:
| Q |
4 |
tgcagtaactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctccca |
77 |
Q |
| |
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||||| |||||||||||| || || ||||||||||||| ||||||||| | |||||| |||||| |||||||| |
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| T |
19030731 |
tgcagaaactgaatgctaatatctaccaaggttttacctctgtttggttgtggaagaaaaccaagtgcctccca |
19030658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 29744109 - 29743899
Alignment:
| Q |
26 |
cttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctcccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagag |
125 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||| | |||| |||||||||||||| | |||| ||||| |||||| |||||| ||| |||||| |
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| T |
29744109 |
cttccaaggttttacccttgtttggtgatgggagaagatcaagagcctcccaaagcacagtgacatgattattactaaatacaaagtcttttacaaagag |
29744010 |
T |
|
| Q |
126 |
agagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaa |
225 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
29744009 |
ggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattccaa |
29743910 |
T |
|
| Q |
226 |
atttcactgtc |
236 |
Q |
| |
|
|| ||| |||| |
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|
| T |
29743909 |
atctcattgtc |
29743899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 29602152 - 29602362
Alignment:
| Q |
26 |
cttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctcccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagag |
125 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| | |||| |||||||||||||| | ||| | || |||| | ||||| |||| ||||| |
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| T |
29602152 |
cttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagtataagtaacaaatttgaagtctttttcgaagag |
29602251 |
T |
|
| Q |
126 |
agagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaa |
225 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
29602252 |
ggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaattccaa |
29602351 |
T |
|
| Q |
226 |
atttcactgtc |
236 |
Q |
| |
|
|| ||| |||| |
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|
| T |
29602352 |
atctcattgtc |
29602362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 29751142 - 29750932
Alignment:
| Q |
26 |
cttccaaggttttacccctgtttggtggcagaagaacaccaagcgcctcccaaagcacgctaacatccatattagtaaatataaagtccttttgaaagag |
125 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| | |||| |||||||||||||| | ||| |||| |||| ||||| ||| |||||| |
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| T |
29751142 |
cttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagaataattactaaagtggaagtcttttacaaagag |
29751043 |
T |
|
| Q |
126 |
agagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaa |
225 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||| |||||| |||||||||||| |||||||||||| |||||||||||||| |||||||||||| |
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| T |
29751042 |
ggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaattccaa |
29750943 |
T |
|
| Q |
226 |
atttcactgtc |
236 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
29750942 |
atctcattgtc |
29750932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 35158177 - 35158050
Alignment:
| Q |
109 |
aagtccttttgaaagagagagaagcaagcaaaacatcgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcatcttctt |
208 |
Q |
| |
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||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |||| |
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|
| T |
35158177 |
aagtctttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctt |
35158078 |
T |
|
| Q |
209 |
tttgaggtaaattccaaatttcactgtc |
236 |
Q |
| |
|
|||| |||||||||||||| ||| |||| |
|
|
| T |
35158077 |
tttgcggtaaattccaaatctcattgtc |
35158050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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