View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19576_low_3 (Length: 611)
Name: NF19576_low_3
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 41223208 - 41222885
Alignment:
| Q |
13 |
aagaatatactcagagggagagatttgatccctttgtgatcctatccggttcgagtaattagtctctgcagtcgtgcgcagaggcaggatattgattcac |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
41223208 |
aagaaaatactcagagggagagatttgatcc-tttgtgatcctatccggttcgaggaattagtctctgcagtcgtgcgcaaaggctggatactgattcac |
41223110 |
T |
|
| Q |
113 |
attaaaaaggagttcaattcaattcaatagaatttttcgattctatgtcttcggaactatattcattcggcaccacaactttccacacacattcaacctc |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41223109 |
attaaaaaggagttcaattcaat-----agaattttttgattctatgtcttcggaactatattcattcggcaccacaactttccacacacattcaacctc |
41223015 |
T |
|
| Q |
213 |
agaaatagtctcttcaaatgatggaagtggagaccttccatttttctcagactctttcccttttttcaccaattctcatcacagtactaatgaagtaact |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41223014 |
agaaatagtctcttcaaatgatggaagtggagaccttccatttttctcagactctttcccttttttcaccaattctcatcacagtactaatgaagtaact |
41222915 |
T |
|
| Q |
313 |
tctcaacaaaattcaaacccatttgatgaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41222914 |
tctcaacaaaattcaaacccatttgatgaa |
41222885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 398 - 595
Target Start/End: Complemental strand, 41222829 - 41222632
Alignment:
| Q |
398 |
caactgatcaaaaccacactacagtgcagcctctttgtaatgaaagtttctcagcttttgatttttcccaagttaaaaacgaggaatcacaaataagtat |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41222829 |
caactgatcaaaaccacactacagtgcagcctctttgtaatgaaagtttctcagcttttgatttttcccaagttaaaaacgaggaatcacaaataagtat |
41222730 |
T |
|
| Q |
498 |
tgattattataactacaatactaatactaataataaccaattccttcctcatagttacagtggtgatgagaatgtatcaaagtacatgcaaagaagct |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41222729 |
tgattattataactacaatactaatactaataataatcaattccttcctcatagttacagtggtgatgagaatgtatcaaagtacatgcaaagaagct |
41222632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University