View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_low_32 (Length: 224)

Name: NF19576_low_32
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_low_32
NF19576_low_32
[»] chr8 (8 HSPs)
chr8 (17-211)||(4379110-4379305)
chr8 (151-209)||(38376548-38376606)
chr8 (151-209)||(44446309-44446367)
chr8 (149-209)||(6312362-6312422)
chr8 (151-209)||(5156896-5156954)
chr8 (151-209)||(29555860-29555918)
chr8 (151-207)||(28824466-28824522)
chr8 (118-209)||(44260646-44260737)
[»] chr2 (5 HSPs)
chr2 (149-211)||(37202346-37202408)
chr2 (151-209)||(25216741-25216799)
chr2 (146-209)||(45139304-45139367)
chr2 (149-209)||(37772274-37772334)
chr2 (151-209)||(22424386-22424444)
[»] chr4 (4 HSPs)
chr4 (149-209)||(34747518-34747578)
chr4 (151-209)||(4206548-4206606)
chr4 (151-209)||(39232456-39232514)
chr4 (151-209)||(46513342-46513400)
[»] chr6 (5 HSPs)
chr6 (151-209)||(19803726-19803784)
chr6 (151-209)||(22510086-22510144)
chr6 (151-209)||(33775913-33775971)
chr6 (151-209)||(305312-305370)
chr6 (151-209)||(644445-644503)
[»] chr3 (4 HSPs)
chr3 (151-209)||(1194444-1194502)
chr3 (161-209)||(16073998-16074047)
chr3 (151-209)||(11504018-11504076)
chr3 (151-209)||(47862128-47862186)
[»] chr1 (3 HSPs)
chr1 (148-209)||(14588247-14588308)
chr1 (151-209)||(250024-250082)
chr1 (151-209)||(36180064-36180122)
[»] chr7 (1 HSPs)
chr7 (151-209)||(47942355-47942413)
[»] chr5 (1 HSPs)
chr5 (151-209)||(4275916-4275974)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 4379305 - 4379110
Alignment:
Q  17 aatatatttgacttaaaactaatatggaagcagggtatgatatggggacagggaaggtataaaatttg-ccccagttcccacccctccccattcatgcct 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4379305 aatatatttgacttaaaactaatatgggagcagggtatgatatggggacagggaaggtataaaatttgtccccagttcccacccctccccattcatgcct 4379206  T
Q  116 agattatccacatcatcaaaacctcactatacatgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaatg 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4379205 agattatccacatcatcaaaacctcactatacatactaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaatg 4379110  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 38376548 - 38376606
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| | ||||||||||||| | |||||||||||    
T  38376548 ctaaatgattgcaattgagtaaagattgacgctatttgttctattaattgtgatgaaaa 38376606  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 44446309 - 44446367
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| || |||||||||||| | |||||||||||    
T  44446309 ctaaatgattgcaattgagtaaagattgacgtcatttgttctattaattgtgatgaaaa 44446367  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 6312422 - 6312362
Alignment:
Q  149 tgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    |||||| |||| ||||||||||||||||||| | ||| || |||||||||| |||||||||    
T  6312422 tgctaattgatcgcaattgagtgaagattgacgctatatgatctattgactatgatgaaaa 6312362  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 5156954 - 5156896
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  5156954 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 5156896  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 29555918 - 29555860
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  29555918 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 29555860  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 28824466 - 28824522
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaa 207  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||    
T  28824466 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaa 28824522  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 44260737 - 44260646
Alignment:
Q  118 attatccac-atcatcaaaacctcactatacatgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| ||||| |||||| ||||| ||||||||| ||||  ||||||||||| |||||| | |||||||| |||| | | |||||||||    
T  44260737 attatccaccatcataaaaacc-cactaaacatgctaattgattacaattgagtgatgattgacgctatttgttttatttattatgatgaaaa 44260646  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 37202346 - 37202408
Alignment:
Q  149 tgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaatg 211  Q
    |||||| |||| ||||||||||||||||||| | || ||||||||||||||||||||||||||    
T  37202346 tgctaattgatcgcaattgagtgaagattgacgctagttgttctattgactgtgatgaaaatg 37202408  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 25216741 - 25216799
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| ||||||||||||| ||||| | ||||||||||||||| |||||||||||    
T  25216741 ctaaatgattgcaattgagtgaaaattgacgctatttgttctattgattgtgatgaaaa 25216799  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 45139367 - 45139304
Alignment:
Q  146 acatgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| ||||  |||||||||||| |||||  |||||||||||||||| |||||||||||    
T  45139367 acatgctaattgatctcaattgagtgaatattgacattatttgttctattgattgtgatgaaaa 45139304  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 37772274 - 37772334
Alignment:
Q  149 tgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    |||||| |||| ||||||| | ||||||||| | |||||||||||||||||||||| ||||    
T  37772274 tgctaattgatcgcaattgggggaagattgacgctatttgttctattgactgtgataaaaa 37772334  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 22424444 - 22424386
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  22424444 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 22424386  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 34747518 - 34747578
Alignment:
Q  149 tgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    |||||| |||| ||||||||||||||||| ||  ||||||||||||||| |||||||||||    
T  34747518 tgctaattgatcgcaattgagtgaagatttattctatttgttctattgattgtgatgaaaa 34747578  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 4206548 - 4206606
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  4206548 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 4206606  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 39232514 - 39232456
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  39232514 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 39232456  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 46513342 - 46513400
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||| |||||||||||| | | ||||||||||||| | |||||||||||    
T  46513342 ctaaatgattgcaactgagtgaagattaacgctatttgttctattaattgtgatgaaaa 46513400  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 19803784 - 19803726
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| ||||||||||||||||| | | ||||||||||||| | |||||||||||    
T  19803784 ctaaatgattgcaattgagtgaagattaacgctatttgttctattaattgtgatgaaaa 19803726  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 22510144 - 22510086
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| ||||||||||||||||| | | ||||||||||||| | |||||||||||    
T  22510144 ctaaatgattgcaattgagtgaagattaacgctatttgttctattaattgtgatgaaaa 22510086  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 33775971 - 33775913
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| || |||||||||||| | |||||||||||    
T  33775971 ctaaatgattgcaattgagtaaagattgacgtcatttgttctattaattgtgatgaaaa 33775913  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 305370 - 305312
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  305370 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 305312  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 644503 - 644445
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  644503 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 644445  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 1194502 - 1194444
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| ||||||||||||||||| | | ||||||||||||| | |||||||||||    
T  1194502 ctaaatgattgcaattgagtgaagattaacgctatttgttctattaattgtgatgaaaa 1194444  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 16074047 - 16073998
Alignment:
Q  161 gcaattgagtgaagatt-gatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  16074047 gcaattgagtgaatatttgatgttatttgttctattgattgtgatgaaaa 16073998  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 11504018 - 11504076
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  11504018 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 11504076  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 47862186 - 47862128
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  47862186 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 47862128  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 14588247 - 14588308
Alignment:
Q  148 atgctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||| |||| ||||||||||||| ||||| | ||||||||||| ||| |||||||||||    
T  14588247 atgctaattgatcgcaattgagtgaatattgacgctatttgttctactgattgtgatgaaaa 14588308  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 250024 - 250082
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  250024 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 250082  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 36180064 - 36180122
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  36180064 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 36180122  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 47942413 - 47942355
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  47942413 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 47942355  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 4275974 - 4275916
Alignment:
Q  151 ctaaatgatagcaattgagtgaagattgatgttatttgttctattgactgtgatgaaaa 209  Q
    ||||||||| |||||||||| |||||||| |  |||||||||||| | |||||||||||    
T  4275974 ctaaatgattgcaattgagtaaagattgacgccatttgttctattaattgtgatgaaaa 4275916  T

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