View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_low_34 (Length: 203)

Name: NF19576_low_34
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_low_34
NF19576_low_34
[»] chr8 (10 HSPs)
chr8 (10-190)||(12177313-12177493)
chr8 (10-190)||(12188634-12188814)
chr8 (10-190)||(12421741-12421921)
chr8 (10-190)||(12433062-12433242)
chr8 (142-180)||(6062740-6062778)
chr8 (142-190)||(32633309-32633357)
chr8 (143-180)||(6071826-6071863)
chr8 (73-185)||(5549762-5549874)
chr8 (142-190)||(6310481-6310529)
chr8 (142-186)||(14404759-14404803)
[»] chr3 (1 HSPs)
chr3 (143-186)||(23455160-23455203)
[»] chr6 (2 HSPs)
chr6 (140-186)||(33264700-33264746)
chr6 (140-186)||(33412004-33412050)
[»] chr2 (1 HSPs)
chr2 (140-186)||(17438811-17438857)
[»] scaffold1749 (1 HSPs)
scaffold1749 (145-186)||(50-91)
[»] scaffold0428 (1 HSPs)
scaffold0428 (145-186)||(8811-8852)
[»] scaffold0363 (1 HSPs)
scaffold0363 (142-186)||(14050-14094)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 12177493 - 12177313
Alignment:
Q  10 gacatcatcaaagtagtttcccaaaatctgaatcaaaagtataccaatgaacttagatgtttgttcataccagatgaaaactattcaagcattgaatcat 109  Q
    ||||||||||||| |||   ||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12177493 gacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaatgaacttagatgcttgttcataccagatgaaaactattcaagcattgaatcat 12177394  T
Q  110 tattaaaaaatgattcaagcgaggttagaactattggaatttggggcatgggaggtataggaaagacaacccttgctgctg 190  Q
    ||||||||   |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12177393 tattaaaagtagattcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctg 12177313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 12188814 - 12188634
Alignment:
Q  10 gacatcatcaaagtagtttcccaaaatctgaatcaaaagtataccaatgaacttagatgtttgttcataccagatgaaaactattcaagcattgaatcat 109  Q
    ||||||||||||| ||||  ||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12188814 gacatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaatgagcttagatgtttgttcataccagatgaagactattcaagcattgaatcat 12188715  T
Q  110 tattaaaaaatgattcaagcgaggttagaactattggaatttggggcatgggaggtataggaaagacaacccttgctgctg 190  Q
    | |||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12188714 ttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctg 12188634  T

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Target: chr8; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 12421921 - 12421741
Alignment:
Q  10 gacatcatcaaagtagtttcccaaaatctgaatcaaaagtataccaatgaacttagatgtttgttcataccagatgaaaactattcaagcattgaatcat 109  Q
    ||||||||||||| |||   ||||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12421921 gacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaatgaacttagatgcttgttcataccagatgaaaactattcaagcattgaatcat 12421822  T
Q  110 tattaaaaaatgattcaagcgaggttagaactattggaatttggggcatgggaggtataggaaagacaacccttgctgctg 190  Q
    ||||||||   |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12421821 tattaaaagtagattcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctg 12421741  T

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Target: chr8; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 12433242 - 12433062
Alignment:
Q  10 gacatcatcaaagtagtttcccaaaatctgaatcaaaagtataccaatgaacttagatgtttgttcataccagatgaaaactattcaagcattgaatcat 109  Q
    ||||||||||||| ||||  ||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12433242 gacatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaatgagcttagatgtttgttcataccagatgaagactattcaagcattgaatcat 12433143  T
Q  110 tattaaaaaatgattcaagcgaggttagaactattggaatttggggcatgggaggtataggaaagacaacccttgctgctg 190  Q
    | |||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12433142 ttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctg 12433062  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 6062778 - 6062740
Alignment:
Q  142 attggaatttggggcatgggaggtataggaaagacaacc 180  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  6062778 attggaatttggggcatgggaggaataggaaagacaacc 6062740  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 32633309 - 32633357
Alignment:
Q  142 attggaatttggggcatgggaggtataggaaagacaacccttgctgctg 190  Q
    |||||| ||||||||||||| || ||||| |||||||||||||||||||    
T  32633309 attggactttggggcatggggggcataggtaagacaacccttgctgctg 32633357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 6071863 - 6071826
Alignment:
Q  143 ttggaatttggggcatgggaggtataggaaagacaacc 180  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  6071863 ttggaatttggggcatgggcggtatgggaaagacaacc 6071826  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 5549762 - 5549874
Alignment:
Q  73 ttcataccagatgaaaactattcaagcattgaatcattattaaaaaatgattcaagcgaggttagaactattggaatttggggcatgggaggtataggaa 172  Q
    |||||||| ||||||||||||   |||||| |||| ||| |||||  ||||||||  || |||  ||  |||||| ||||||| |||||||| || || |    
T  5549762 ttcatacctgatgaaaactatcggagcattcaatctttaataaaatttgattcaacagaagttcaaatcattggagtttggggtatgggaggcattggta 5549861  T
Q  173 agacaacccttgc 185  Q
    |||||||||||||    
T  5549862 agacaacccttgc 5549874  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 6310529 - 6310481
Alignment:
Q  142 attggaatttggggcatgggaggtataggaaagacaacccttgctgctg 190  Q
    |||||| ||||||| |||||||| | ||| |||||||||||||||||||    
T  6310529 attggactttggggtatgggaggcacaggtaagacaacccttgctgctg 6310481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 14404759 - 14404803
Alignment:
Q  142 attggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    |||||||||||||| |||||||| | ||| |||||||||||||||    
T  14404759 attggaatttggggtatgggaggcacaggtaagacaacccttgct 14404803  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 23455203 - 23455160
Alignment:
Q  143 ttggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  23455203 ttggaatatggggcatgggtggcataggaaagacaacccttgct 23455160  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 33264746 - 33264700
Alignment:
Q  140 ctattggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    |||| ||||||||||| |||||||| ||||| |||||||||||||||    
T  33264746 ctataggaatttgggggatgggaggaatagggaagacaacccttgct 33264700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 33412050 - 33412004
Alignment:
Q  140 ctattggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    ||||||||||||| || ||||| || |||||||||||||||||||||    
T  33412050 ctattggaatttgtggaatgggcggaataggaaagacaacccttgct 33412004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 17438811 - 17438857
Alignment:
Q  140 ctattggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    |||| ||||||||||| |||||||| ||||| |||||||||||||||    
T  17438811 ctataggaatttgggggatgggaggaatagggaagacaacccttgct 17438857  T

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Target: scaffold1749 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 91 - 50
Alignment:
Q  145 ggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    ||||||||||| |||||||| ||||| |||||||||||||||    
T  91 ggaatttgggggatgggaggaatagggaagacaacccttgct 50  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 8852 - 8811
Alignment:
Q  145 ggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    ||||||||||| |||||||| ||||| |||||||||||||||    
T  8852 ggaatttgggggatgggaggaatagggaagacaacccttgct 8811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 14094 - 14050
Alignment:
Q  142 attggaatttggggcatgggaggtataggaaagacaacccttgct 186  Q
    |||||||||||||| |||||||| | ||| |||||||||||||||    
T  14094 attggaatttggggtatgggaggcacaggtaagacaacccttgct 14050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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