View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_5 (Length: 462)
Name: NF19576_low_5
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 8558281 - 8557837
Alignment:
| Q |
18 |
aacccaaatcacttaaattaaactaaacataaaattatcaattattaattcaacagaatcaaaataagttgacataccaagaagaggcttaactttatta |
117 |
Q |
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| T |
8558281 |
aacccaaatcactttaattaaactaaacataacattatcaattattaattcaacagaatcaaaataagttgacataccaagaagaggcttaactttatta |
8558182 |
T |
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| Q |
118 |
ctctgcaaattcccaataaaatgccactcaatatcttcaggaagctgaggagctttctcaattatttcctgaacgtaattctcaccgaagcaacgatgtc |
217 |
Q |
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| T |
8558181 |
ctctgcaaattcccaataaaatgccactcaatatcttcaggaagctgaggagctttctcaattatttcctgaacgtaattctcaccgaagcaacgatgtc |
8558082 |
T |
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| Q |
218 |
cggcgtcatacacctgccggagcatggaaactgacttcgtcttactcgccgccaccacccggatttctttcacgtctcgcctcgatctctccgcggcatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8558081 |
cggcgtcatacacctgccggagcatggaaactgacttcgtcttactcgccgccaccacccggatttctttcacgtctcggctcgatctctccgcggcatg |
8557982 |
T |
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| Q |
318 |
gtggacgcgatcaagcaccgcctttagcaacgccgctgcgccgccctgtgaggatgatgtcattttttatttgtaataaattgtaaatgccatgtcatcg |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8557981 |
gtggacgcgatcaagcaccgcctttagcgacgccgctgcgccgccctgtgaggatgatgtcattttttatttgtaataaattgtaaatgccatgtcatcg |
8557882 |
T |
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| Q |
418 |
cagttttatacgtacgaaatacgaataacatcgatgcaagtataa |
462 |
Q |
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| T |
8557881 |
cagttttataggtacgaaatacgaataacatcgatgcaagaataa |
8557837 |
T |
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