View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19576_low_6 (Length: 461)

Name: NF19576_low_6
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19576_low_6
NF19576_low_6
[»] chr2 (4 HSPs)
chr2 (71-451)||(31330366-31330746)
chr2 (71-451)||(31337087-31337467)
chr2 (280-426)||(2694672-2694805)
chr2 (226-303)||(31316273-31316352)
[»] chr4 (1 HSPs)
chr4 (71-337)||(31662490-31662756)
[»] chr8 (3 HSPs)
chr8 (280-426)||(5559164-5559297)
chr8 (196-358)||(34149932-34150098)
chr8 (380-430)||(25637223-25637273)
[»] chr3 (2 HSPs)
chr3 (280-426)||(19357899-19358032)
chr3 (226-311)||(18112715-18112802)
[»] chr5 (2 HSPs)
chr5 (280-426)||(37367646-37367779)
chr5 (280-426)||(41529793-41529926)
[»] chr7 (3 HSPs)
chr7 (144-261)||(34455146-34455266)
chr7 (356-430)||(4342653-4342727)
chr7 (280-321)||(34455281-34455322)
[»] chr6 (2 HSPs)
chr6 (241-348)||(5248687-5248795)
chr6 (24-57)||(28247277-28247310)
[»] scaffold0038 (1 HSPs)
scaffold0038 (24-57)||(47439-47472)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 71 - 451
Target Start/End: Original strand, 31330366 - 31330746
Alignment:
Q  71 gcttatgtgttttgcttgagttatggaagaattagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 170  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330366 gcttatgtgttttgcttgagttatggaagaagtagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 31330465  T
Q  171 tggtttgaaggagttagagctaagatggtgatcatgtagagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaa 270  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330466 tggtttgaagaagttagagctaagatggtgatcatgtaaagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaa 31330565  T
Q  271 gacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31330566 gacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggt 31330665  T
Q  371 gaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgtaatttcatttggcattctgtg 451  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31330666 aaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgttatttcatttggcattctgtg 31330746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 71 - 451
Target Start/End: Original strand, 31337087 - 31337467
Alignment:
Q  71 gcttatgtgttttgcttgagttatggaagaattagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 170  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337087 gcttatgtgttttgcttgagttatggaagaagtagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 31337186  T
Q  171 tggtttgaaggagttagagctaagatggtgatcatgtagagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaa 270  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337187 tggtttgaagaagttagagctaagatggtgatcatgtaaagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaa 31337286  T
Q  271 gacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31337287 gacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggt 31337386  T
Q  371 gaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgtaatttcatttggcattctgtg 451  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31337387 aaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgttatttcatttggcattctgtg 31337467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 426
Target Start/End: Original strand, 2694672 - 2694805
Alignment:
Q  280 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||    
T  2694672 agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat 2694758  T
Q  380 tattttgagaagaaatttaagttatgttgattcattagaagtataag 426  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  2694759 tattttgagaagaaattcaagttatgttgattgattagatgtataag 2694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 31316352 - 31316273
Alignment:
Q  226 tgttgtattttgagc--tagaggcaagcttgagcaagattaaggcaagacaccaagagctaggg-tttggcttggcaagaa 303  Q
    |||||| ||||||||  |||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  31316352 tgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagaca-caagagctagggttttggcttggcaagaa 31316273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 71 - 337
Target Start/End: Original strand, 31662490 - 31662756
Alignment:
Q  71 gcttatgtgttttgcttgagttatggaagaattagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 170  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662490 gcttatgtgttttgcttgagttatggaagaagtagaacctctaaacaacttgttctctcattcttcctctcctaagaagttcattcaagtgatcctagca 31662589  T
Q  171 tggtttgaaggagttagagctaagatggtgatcatgtagagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662590 tggtttgaaggagttagagctaagatggtgatcatgtagagagaattgaagtttgtgttgtattttgagctagaggcaagcttgagcaagattaaggcaa 31662689  T
Q  271 gacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31662690 gacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatg 31662756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 426
Target Start/End: Complemental strand, 5559297 - 5559164
Alignment:
Q  280 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||             |||||||||||||||||||||||||||||||| ||||||||    
T  5559297 agctagggtttggcttggcaagaagattgaggcaggggctgaatgt-------------aagtataagtgattaatagcttaaattgaggtaaaagtgat 5559211  T
Q  380 tattttgagaagaaatttaagttatgttgattcattagaagtataag 426  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  5559210 tattttgagaagaaattcaagttatgttgattgattagatgtataag 5559164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 358
Target Start/End: Original strand, 34149932 - 34150098
Alignment:
Q  196 tggtgatcatgtagagagaattgaagtttgt-gttgtattttgagc--tagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttgg 292  Q
    |||| |||||||| ||  ||||||||||||  ||| || |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34149932 tggtaatcatgtaaaggaaattgaagtttggagttatactttgagcattagaggcaagcttgagcaagattgaggcaagacaccaagagctagggtttgg 34150031  T
Q  293 cttggcaagaagatagaggcaggggctgaatgttgcaactgaa-tgtaagtataagtgattaatagc 358  Q
    |||||||||||||| ||| || ||| ||| | ||| || |||| |||||||||||||||| ||||||    
T  34150032 cttggcaagaagattgagtcaagggatgagtattgaaattgaagtgtaagtataagtgataaatagc 34150098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 25637223 - 25637273
Alignment:
Q  380 tattttgagaagaaatttaagttatgttgattcattagaagtataagctgt 430  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  25637223 tattttgagaagaaatttaagttatgttgattaattataagcataagctgt 25637273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 426
Target Start/End: Original strand, 19357899 - 19358032
Alignment:
Q  280 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||    
T  19357899 agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat 19357985  T
Q  380 tattttgagaagaaatttaagttatgttgattcattagaagtataag 426  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  19357986 tattttgagaagaaattcaagttatgttgattgattagatgtataag 19358032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 18112802 - 18112715
Alignment:
Q  226 tgttgtattttgagc--tagaggcaagcttgagcaagattaaggcaagacaccaagagctaggg-tttggcttggcaagaagatagagg 311  Q
    |||||| ||||||||  |||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  18112802 tgttgtgttttgagcattagaggcaagtttgagcaagattaatgcaagaca-caagagctagggttttggcttggcaagaagattgagg 18112715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 280 - 426
Target Start/End: Original strand, 37367646 - 37367779
Alignment:
Q  280 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||    
T  37367646 agctagggtttggcttggcaagaagattgaggcaggggctga-------------atgtaagtataagtgattaatagcttaaattgaggtaaaagtgat 37367732  T
Q  380 tattttgagaagaaatttaagttatgttgattcattagaagtataag 426  Q
    |||||||||||| |||| |||||||||||||| |||||| |||||||    
T  37367733 tattttgagaagcaattcaagttatgttgattgattagatgtataag 37367779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 280 - 426
Target Start/End: Complemental strand, 41529926 - 41529793
Alignment:
Q  280 agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaatgtaagtataagtgattaatagcttaaattgaggtgaaagtgat 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||             |||||||||||||||||||||||||||||||| ||||||||    
T  41529926 agctagggtttggcttggcaagaagattgaggcaggggctgaatgt-------------aagtataagtgattaatagcttaaattgaggtaaaagtgat 41529840  T
Q  380 tattttgagaagaaatttaagttatgttgattcattagaagtataag 426  Q
    ||||||| ||||||||| |||||||||||||| |||||| |||||||    
T  41529839 tattttgggaagaaattcaagttatgttgattgattagatgtataag 41529793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 34455146 - 34455266
Alignment:
Q  144 aagaagttcattcaagtgatcctagcatggtttgaaggagttagagctaagatggtgatcatgtagagagaattgaag-tttgtgttgtattttgagc-- 240  Q
    ||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||| ||||||||| || |||||||| |||||||||| |||  |||      
T  34455146 aagaaattcattcaagtgattctagcatgggttgaagaagttagagctaagatggtaatcatgtagtgaaaattgaagctttgtgttgtgtttgaagcat 34455245  T
Q  241 tagaggcaagcttgagcaaga 261  Q
    |||||  ||||||||||||||    
T  34455246 tagagataagcttgagcaaga 34455266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 4342727 - 4342653
Alignment:
Q  356 agcttaaattgaggtgaaagtgattattttgagaagaaatttaagttatgttgattcattagaagtataagctgt 430  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  4342727 agctaaaattgaggtaaaagtgcttattttgagaagaaatttaagttatgttgattaattataagcataagctgt 4342653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 34455281 - 34455322
Alignment:
Q  280 agctagggtttggcttggcaagaagatagaggcaggggctga 321  Q
    ||||||||||||||||||||||||||| || ||| |||||||    
T  34455281 agctagggtttggcttggcaagaagattgaagcaagggctga 34455322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 5248687 - 5248795
Alignment:
Q  241 tagaggcaagcttgagcaagattaaggcaagacaccaagagctagggtttggcttggcaagaagatagaggcaggggctgaatgttgcaactgaa-tgta 339  Q
    ||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||| || || ||| || ||||||| | ||| || |||| ||||    
T  5248687 tagaggcaagctttagcaagattgagtcaagacaccaagagatagggtttggcttggcaataaaatcgagacaagggctgagtattgaaattgaagtgta 5248786  T
Q  340 agtataagt 348  Q
    |||||||||    
T  5248787 agtataagt 5248795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 28247310 - 28247277
Alignment:
Q  24 atagaattatacttgtcatttctatagttagccc 57  Q
    ||||||||||||||||||||||||| ||||||||    
T  28247310 atagaattatacttgtcatttctatggttagccc 28247277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 47472 - 47439
Alignment:
Q  24 atagaattatacttgtcatttctatagttagccc 57  Q
    ||||||||||||||||||||||||| ||||||||    
T  47472 atagaattatacttgtcatttctatggttagccc 47439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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