View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_7 (Length: 450)
Name: NF19576_low_7
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 43010157 - 43010575
Alignment:
| Q |
10 |
aagaatatcaatcttgaaataacattacagtccacttgttaagtaataaagagccgttaagttcaataaacttatgaatgaaggaagtactgttcttgaa |
109 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43010157 |
aagaatatcaatcttgaaataacattaaagtgcacttgttaagtaataaagagtcattaagttcaataaacttatgaatgaag----tactgttcttgaa |
43010252 |
T |
|
| Q |
110 |
aattatttggtatgatatttgagggttaaagtacacaatataaacctttatacagagctgaaaactggatgaagcatcaaaagtagttatattcgtggcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43010253 |
aattatttggtatgatatttgagggttaaagtacacaatataaacctttatacagagctgaaaactggatgaagcatcaaaagtagttatattcgtggcc |
43010352 |
T |
|
| Q |
210 |
gaggcatgagagtcattaggtgtaacgatttggtttggttcacagtcataaaatgttcaaagtgatcaaatttatatcaattcagtttggttttcaatat |
309 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43010353 |
gaggcatgagggtcattaggtgtaacgatttggtttggttcacagtcataaaatgttcaaagtgatcaaatttatatcaattcggtttggttttcaatat |
43010452 |
T |
|
| Q |
310 |
ttttcagaaaattgaactaaactaaaatgagaatatacgcaattcaattcctatttgagcacacacattatatatgcaattgaaaatattatcttcacta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43010453 |
ttttcagaaaattgaactaaactaaaatgagaatatacgcaattcaattcttatttgagcacacacattatatatgcaattgaaaatattatcttcacta |
43010552 |
T |
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| Q |
410 |
cattataaactttagcagcttct |
432 |
Q |
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| T |
43010553 |
cattataaactttagcagcttct |
43010575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 18217803 - 18218104
Alignment:
| Q |
10 |
aagaatatcaatcttgaaataacattacagtccacttgttaagtaataaagagccgttaagttcaataaacttatgaatgaaggaagtactgttcttgaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
18217803 |
aagaatatcaatcttgaaataacattacagtccacttgttaagtaataaagagttgttaagttcaataaatctatgaat----gaagtactgttcttgaa |
18217898 |
T |
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| Q |
110 |
aattatttggtatgatatttgagggttaaagtacacaat----ataaaccttt--atacagagctgaaaactggatgaagcatcaaaagtagttatattc |
203 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
18217899 |
aattatttggtatgatgtttgagggttaaagtacacaatataaataaaccttttagaacagagttgaaaactggatgaagcatcaaaagtagttatgttc |
18217998 |
T |
|
| Q |
204 |
gtggccgaggcatgagag--tcattaggtgtaacgatttggtttggttcacagtcataaaatgttcaaagtgatcaaatttatatcaattcagtttggtt |
301 |
Q |
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|||||| ||||||||||| |||||| ||||||||||||||||||||| || |||| ||| |||||||| ||||||||||||||| || ||| || ||| |
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| T |
18217999 |
gtggccaaggcatgagagtatcattaagtgtaacgatttggtttggtttacggtcaaaaattgttcaaaccgatcaaatttatatcgatccagattagtt |
18218098 |
T |
|
| Q |
302 |
ttcaat |
307 |
Q |
| |
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|||||| |
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| T |
18218099 |
ttcaat |
18218104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 432
Target Start/End: Original strand, 18218362 - 18218405
Alignment:
| Q |
390 |
tgaaaatattatcttcactac-attataaactttagcagcttct |
432 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
18218362 |
tgaaaatattatcttcactactattataaacttcagcagcttct |
18218405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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