View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19576_low_8 (Length: 446)
Name: NF19576_low_8
Description: NF19576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19576_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 14003184 - 14002754
Alignment:
| Q |
10 |
aagaatataaaaccaaagaaattgagctttaaaccttccacaccaattgaagtagcttcttatcctcacttgcattttttcccctcatcattattttatc |
109 |
Q |
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| T |
14003184 |
aagaaaataaaaccaaagaaattgagctttaaaccttccacaccaattgaagtagcttcttatcctcacttgcattttttcccctcatcattattttatc |
14003085 |
T |
|
| Q |
110 |
cttttgctttgatctaacatatgatcctttcacaggaacagggcttgaacctgcccttaaactcttctcccaatcaatcttcttaacttctttcaaacat |
209 |
Q |
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| T |
14003084 |
cttttgctttgatctaacatatgatcctttcacaggaacagggcttgaacctgcccttaaactcttctcccaatcaatcttcttaacttctttcaaacat |
14002985 |
T |
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| Q |
210 |
tttttgggtctaaaatttggtgtaaaagcacaaccctttttatttgcttctttgttaacctccttgatttcaattttagttcctccttccattctcatcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002984 |
tttttgggtctaaaatttggtgtaaaagcacaaccctttttatttgcttctttgttaacctccttgatttcaattttagttcctccttccattctcatcc |
14002885 |
T |
|
| Q |
310 |
ttataatcacctcagaaagtgctctaattttattatctactttaacaaatgctgcatcttttgcatctctctcctttctctgctgaaaaatccggagcaa |
409 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002884 |
ttataatcacctcagaaagtgctctaattttgttatctactttaacaaatgctgcatcttttgcatctctctcctttctctgctgaaaaatccggagcaa |
14002785 |
T |
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| Q |
410 |
tcgacgagcaagattgtataaaccttcctta |
440 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14002784 |
tcgacgagcaagattgtataaaccttcctta |
14002754 |
T |
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