View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19577_high_4 (Length: 474)
Name: NF19577_high_4
Description: NF19577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19577_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 218 - 456
Target Start/End: Original strand, 26217246 - 26217484
Alignment:
| Q |
218 |
gaaaaattgtggtcatgatatatttactgcgggttgcactttgaaggtctctgttatctttcctcctagcctaattacaagctcaacaaacattgatcta |
317 |
Q |
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| T |
26217246 |
gaaaaattgtggtcatcatatatttactgcgggttgcactttgaaggtctctgttatctttcctcctagcctaattacaaactcaacaaacattgatcta |
26217345 |
T |
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| Q |
318 |
atccctataggagaggtttattcatctatagctttatgtaatgtgctctataaagttgtggttaaagtattagccaacatgttgaaagtgtacttgataa |
417 |
Q |
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| T |
26217346 |
atccctataggagaggtttattcatctatagctttatgtaatgtgctctataaagttgtggttaaagtattagccaacatgttgaaagtgtacttgataa |
26217445 |
T |
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| Q |
418 |
gtgtatatacaaaaatcaatcagcttttgtgtcaagtta |
456 |
Q |
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| T |
26217446 |
gtgtatatacaaaaatcaatcagcttttgtgtcaagtta |
26217484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 26216975 - 26217187
Alignment:
| Q |
9 |
gagatgaagatggcacaatatgtagaacgtgggacggaatgacttccatggcttgtgattattttttagaacttttttaaaagcagaatagctccagtga |
108 |
Q |
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| T |
26216975 |
gagatgaagatggcacaatatgtagaacgcgggacggaatgacttccatggcttgtgattattttttagaacttttttagaagcagaatagcaccagtga |
26217074 |
T |
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| Q |
109 |
ggcgattcttaatgccattaatccatctatcactattcactagtatggataatgagtttctatttgctgctttcctatttgaagaattcaaggaaaccat |
208 |
Q |
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| T |
26217075 |
ggcgattcttaataccattaatccatctaacactattcactagtatggataatgagtttctatttgccgctttcctatttgaagaattcaaggaaaccat |
26217174 |
T |
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| Q |
209 |
cttctctatgaaa |
221 |
Q |
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| T |
26217175 |
cttctctatgaaa |
26217187 |
T |
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