View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19577_low_1 (Length: 811)

Name: NF19577_low_1
Description: NF19577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19577_low_1
NF19577_low_1
[»] chr3 (34 HSPs)
chr3 (251-790)||(8894817-8895358)
chr3 (251-412)||(14206695-14206855)
chr3 (251-412)||(14214443-14214603)
chr3 (254-383)||(48338034-48338163)
chr3 (14-108)||(8895695-8895787)
chr3 (265-412)||(48336388-48336535)
chr3 (107-179)||(8895430-8895502)
chr3 (251-354)||(46688505-46688607)
chr3 (251-354)||(46690208-46690312)
chr3 (329-415)||(50719693-50719780)
chr3 (329-415)||(50793068-50793155)
chr3 (255-357)||(50003141-50003243)
chr3 (254-355)||(2764003-2764104)
chr3 (254-355)||(44115535-44115636)
chr3 (255-357)||(27225529-27225631)
chr3 (254-355)||(2762887-2762988)
chr3 (253-359)||(28777600-28777706)
chr3 (253-359)||(37610676-37610782)
chr3 (253-359)||(43393966-43394072)
chr3 (254-355)||(44116599-44116700)
chr3 (254-359)||(53180718-53180823)
chr3 (260-357)||(54353124-54353221)
chr3 (265-357)||(27226467-27226559)
chr3 (260-354)||(39531740-39531834)
chr3 (259-357)||(5384517-5384615)
chr3 (255-353)||(21248175-21248273)
chr3 (257-359)||(31937134-31937236)
chr3 (257-359)||(31938224-31938326)
chr3 (260-354)||(33000724-33000818)
chr3 (253-359)||(37609420-37609526)
chr3 (260-354)||(39530893-39530987)
chr3 (260-354)||(45730735-45730829)
chr3 (253-358)||(47431100-47431205)
chr3 (113-142)||(49486056-49486085)
[»] scaffold0024 (1 HSPs)
scaffold0024 (505-790)||(14603-14888)
[»] chr8 (20 HSPs)
chr8 (251-412)||(11080946-11081107)
chr8 (251-355)||(35462903-35463007)
chr8 (254-357)||(20066174-20066277)
chr8 (271-355)||(35462765-35462849)
chr8 (255-357)||(44770532-44770634)
chr8 (251-354)||(12820013-12820116)
chr8 (260-401)||(9189446-9189586)
chr8 (260-396)||(4534953-4535088)
chr8 (265-390)||(4534097-4534221)
chr8 (253-359)||(9244164-9244270)
chr8 (253-359)||(9245344-9245450)
chr8 (260-354)||(16346197-16346291)
chr8 (260-354)||(22914114-22914208)
chr8 (253-359)||(30640896-30641002)
chr8 (253-359)||(41636930-41637036)
chr8 (254-357)||(20067152-20067255)
chr8 (260-354)||(9190366-9190460)
chr8 (253-359)||(20309022-20309128)
chr8 (253-359)||(21095655-21095761)
chr8 (255-353)||(41767082-41767180)
[»] scaffold1337 (1 HSPs)
scaffold1337 (255-389)||(296-431)
[»] chr6 (14 HSPs)
chr6 (251-412)||(682306-682467)
chr6 (251-396)||(683456-683599)
chr6 (255-355)||(13562214-13562314)
chr6 (255-357)||(13561374-13561476)
chr6 (265-354)||(1757423-1757512)
chr6 (253-359)||(34995450-34995556)
chr6 (255-414)||(10673648-10673807)
chr6 (253-359)||(32348950-32349056)
chr6 (253-359)||(32713796-32713902)
chr6 (260-401)||(11724220-11724360)
chr6 (251-357)||(18499817-18499923)
chr6 (253-359)||(34996674-34996780)
chr6 (265-390)||(27107244-27107368)
chr6 (265-390)||(27149050-27149174)
[»] chr5 (22 HSPs)
chr5 (251-381)||(14357796-14357926)
chr5 (251-382)||(30916032-30916163)
chr5 (251-412)||(33362481-33362642)
chr5 (255-357)||(38603668-38603770)
chr5 (251-383)||(14356502-14356633)
chr5 (253-357)||(30674746-30674850)
chr5 (251-322)||(30915628-30915699)
chr5 (258-357)||(42962119-42962218)
chr5 (265-390)||(39135577-39135701)
chr5 (336-396)||(9038518-9038578)
chr5 (255-357)||(39051591-39051692)
chr5 (253-357)||(30673416-30673520)
chr5 (265-356)||(1011985-1012076)
chr5 (260-359)||(9083216-9083315)
chr5 (329-415)||(42963207-42963293)
chr5 (265-390)||(11907090-11907214)
chr5 (253-359)||(19228937-19229043)
chr5 (254-348)||(25212948-25213042)
chr5 (254-348)||(25277100-25277194)
chr5 (260-357)||(39134762-39134859)
chr5 (257-355)||(39350562-39350660)
chr5 (253-358)||(13278144-13278249)
[»] chr4 (27 HSPs)
chr4 (254-412)||(54372787-54372945)
chr4 (251-401)||(20945391-20945541)
chr4 (254-412)||(54373869-54374027)
chr4 (251-401)||(49923679-49923829)
chr4 (254-401)||(37642457-37642605)
chr4 (254-369)||(17521898-17522013)
chr4 (268-414)||(21570354-21570500)
chr4 (251-361)||(20944368-20944478)
chr4 (251-396)||(49922564-49922709)
chr4 (255-357)||(31204650-31204752)
chr4 (251-352)||(17522473-17522574)
chr4 (259-414)||(21569289-21569444)
chr4 (254-345)||(46425918-46426009)
chr4 (257-359)||(48499463-48499565)
chr4 (251-322)||(5547044-5547115)
chr4 (260-354)||(5418153-5418247)
chr4 (253-359)||(22623056-22623162)
chr4 (253-359)||(38032333-38032439)
chr4 (254-355)||(5575427-5575528)
chr4 (253-358)||(34095572-34095677)
chr4 (254-357)||(46425725-46425827)
chr4 (260-354)||(47572684-47572778)
chr4 (253-359)||(18091679-18091785)
chr4 (253-359)||(22621966-22622072)
chr4 (260-401)||(47243914-47244054)
chr4 (254-355)||(5574304-5574405)
chr4 (256-357)||(54822474-54822575)
[»] scaffold0041 (3 HSPs)
scaffold0041 (251-396)||(624-769)
scaffold0041 (251-390)||(1038-1177)
scaffold0041 (260-357)||(85000-85097)
[»] chr2 (12 HSPs)
chr2 (252-401)||(12364242-12364391)
chr2 (258-415)||(20921548-20921706)
chr2 (252-367)||(12365933-12366046)
chr2 (254-357)||(40542331-40542434)
chr2 (258-357)||(370863-370962)
chr2 (265-355)||(10330804-10330893)
chr2 (255-357)||(38593127-38593228)
chr2 (255-357)||(38596723-38596824)
chr2 (253-337)||(16602846-16602930)
chr2 (260-401)||(20630595-20630735)
chr2 (260-354)||(30179476-30179570)
chr2 (259-415)||(371889-372045)
[»] chr1 (18 HSPs)
chr1 (251-412)||(49618472-49618633)
chr1 (251-412)||(52439199-52439360)
chr1 (251-372)||(40778453-40778574)
chr1 (251-355)||(45042707-45042811)
chr1 (251-412)||(49619732-49619894)
chr1 (251-396)||(40779557-40779702)
chr1 (254-357)||(40722950-40723053)
chr1 (257-359)||(50484913-50485015)
chr1 (254-357)||(40721881-40721983)
chr1 (254-355)||(51088634-51088735)
chr1 (251-359)||(5488778-5488886)
chr1 (265-401)||(21246404-21246539)
chr1 (259-401)||(9822703-9822844)
chr1 (253-359)||(7111388-7111494)
chr1 (260-401)||(43808445-43808585)
chr1 (260-357)||(40187703-40187800)
chr1 (253-359)||(52761509-52761615)
chr1 (253-359)||(52759462-52759568)
[»] chr7 (22 HSPs)
chr7 (252-412)||(22794237-22794397)
chr7 (265-372)||(32893538-32893645)
chr7 (251-361)||(29657081-29657192)
chr7 (251-401)||(4973963-4974113)
chr7 (253-355)||(29409154-29409256)
chr7 (251-358)||(4973608-4973715)
chr7 (251-354)||(19218895-19218998)
chr7 (251-383)||(29658528-29658659)
chr7 (255-357)||(42520317-42520419)
chr7 (254-355)||(24653584-24653685)
chr7 (254-383)||(32894713-32894843)
chr7 (258-357)||(47536771-47536870)
chr7 (260-321)||(29408378-29408439)
chr7 (254-357)||(36395908-36396012)
chr7 (259-412)||(23153552-23153705)
chr7 (253-359)||(29186763-29186869)
chr7 (260-357)||(40881186-40881283)
chr7 (253-359)||(43113773-43113879)
chr7 (260-354)||(29344262-29344356)
chr7 (255-321)||(40321201-40321267)
chr7 (253-359)||(44748476-44748582)
chr7 (270-415)||(47535697-47535842)
[»] scaffold0065 (2 HSPs)
scaffold0065 (251-412)||(35404-35564)
scaffold0065 (251-359)||(36626-36731)
[»] scaffold1425 (2 HSPs)
scaffold1425 (257-367)||(1518-1628)
scaffold1425 (257-367)||(225-335)
[»] scaffold0009 (1 HSPs)
scaffold0009 (265-390)||(204601-204725)
[»] scaffold0081 (1 HSPs)
scaffold0081 (251-357)||(42921-43024)
[»] scaffold0141 (1 HSPs)
scaffold0141 (252-357)||(35197-35302)
[»] scaffold0049 (1 HSPs)
scaffold0049 (252-357)||(79510-79615)
[»] scaffold0035 (1 HSPs)
scaffold0035 (265-356)||(21239-21330)
[»] scaffold0034 (1 HSPs)
scaffold0034 (290-372)||(98634-98716)


Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 251 - 790
Target Start/End: Complemental strand, 8895358 - 8894817
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||  ||| ||||||||||||||||||||||    
T  8895358 taaaataaattacgtgttggtgatacacggttagatctgatagacctaatttatccgatgatctccttttttagggggttaaaattaatgaaataggacc 8895259  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaatttnnnnnnngaa-ttaaattatgggattagatgttca 449  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||        || |||||||| ||||| | |||||||    
T  8895258 aaattgaatgaaggaaacaataaaaatgaccaaattgaaacgtttagtagttagtggaccaatttaaaaaaaaaaattaaattaagggatcatatgttca 8895159  T
Q  450 attaag-ctcacttttattagtacttatcaattaataaacaagtacaattttacaacttggtacaatttgtgggtttaaaagagataatgttctttaggg 548  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8895158 attaagtctcacttttattagtacttatcaattaataaacaagtacaattttacaacttggtacaatttgtgggtttaaaagagataatgttctttaggg 8895059  T
Q  549 tgtcataaccaactaaaaagttttgttgagctatgttcccatatacgacccaaggaaatacacttgaattaaaagcaaaacacataacctcatgattcat 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8895058 tgtcataaccaactaaaaagttttgttgagctatgttcccatatacgacccaaggaaatgcacttgaattaaaagcaaaacacataacctcatgattcat 8894959  T
Q  649 ttgaataaaggtgttaaaagcattcaacttgacatcagcaccacgaaaatgtgctgtgattatcggcacctcgtattttttcaatgttgttttgtaacaa 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8894958 ttgaataaaggtgttaaaagcattcaacttgacatcagcaccacgaaaatgtgctgtgattatcggcacctcgtattttttcaatgttgttttgtaacaa 8894859  T
Q  749 agactcaattgttgagtagggtctttaacacgctttaactta 790  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8894858 agactcaattgttgagtagggtctttaacacgctttaactta 8894817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 14206695 - 14206855
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| | ||||| |||||   |   ||||||| ||| ||||||||||    
T  14206695 taaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaac-gtctcatttttatggatgttaaaatgaataaaataggacc 14206793  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||||||| ||||| |||| |||||||||| || ||| ||||| |||| || |||||||    
T  14206794 aaattgaatgatggaaagaagataaatgaccaatttaaaacgtttaatagttagaggaccaa 14206855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 14214443 - 14214603
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| | ||||| |||||   |   ||||||| ||| ||||||||||    
T  14214443 taaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaac-gtctcatttttatggatgttaaaatgaataaaataggacc 14214541  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||||||| ||||| |||| |||||||||| || ||| ||||| |||| || |||||||    
T  14214542 aaattgaatgatggaaagaagataaatgaccaatttaaaacgtttaatagttagaggaccaa 14214603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 254 - 383
Target Start/End: Original strand, 48338034 - 48338163
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    ||||||| || |||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |  | | ||||||| ||| |||||||||||||    
T  48338034 aataaatcaggtgttggtgatacacagttagatctgatagacctcatatatccagcggtctccttttcttggtggttaaaatgaataaaataggaccaaa 48338133  T
Q  354 ttgaatgaaggaaacaagaaaaatgaccaa 383  Q
    |||||||| ||||| |||| ||| ||||||    
T  48338134 ttgaatgatggaaagaagataaaggaccaa 48338163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 8895787 - 8895695
Alignment:
Q  14 agaaagagagagaagaaaccattttttattcactccaaaatcccttttcactaaatcctcaaaggcatatatattttacatgttttaagggatat 108  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||  ||||||||| |||||||||||||||    
T  8895787 agaaagagaaagaagaaaccattttttattcactccaaaaccccttttcactaaatccctaaaggcat--atattttacttgttttaagggatat 8895695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 265 - 412
Target Start/End: Complemental strand, 48336535 - 48336388
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaagg 364  Q
    |||||||||||||| ||||||||| ||| |||| ||||||||| |||||||||||| |  ||| ||||||| ||| ||||||||||||||||||||| ||    
T  48336535 tgttggtgatacacagttagatctaataaacctcatttatccaacggtctccttttcttgggggttaaaatgaataaaataggaccaaattgaatgatgg 48336436  T
Q  365 aaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||| |||| |||||| ||| ||| || ||||| |||| || |||||||    
T  48336435 aaagaagataaatgatcaatttggaacgtttaatagttagaggaccaa 48336388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 8895502 - 8895430
Alignment:
Q  107 atcttattttttggtggatctgattagtgatatgaataatattcagagtttaatataattttattttagcttt 179  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  8895502 atcttattttttggcggatctgattagtgatatgaataatattcagagtctaatttaatttaattttagcttt 8895430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 46688607 - 46688505
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| |||||||||||||| ||||||| ||||  ||||  ||||||||||||||| ||||||| |||  ||||||||||| ||||| ||||    
T  46688607 taaaataaattaggtgttggtgatacacagttagatatgatgaacctgctttatccagcggtcttctttttt-aggatttaaaattaataaaatatgacc 46688509  T
Q  351 aaat 354  Q
    ||||    
T  46688508 aaat 46688505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 46690208 - 46690312
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggac 349  Q
    ||||||||||||| |||||||||||||||||||||| || || ||||  ||||||||  ||||| ||||||| || || ||||||||||| |||||| ||    
T  46690208 taaaataaattaggtgttggtgatacacggttagatatggtaaacctcctttatccaatggtcttcttttttgagagatttaaaattaataaaatagaac 46690307  T
Q  350 caaat 354  Q
    |||||    
T  46690308 caaat 46690312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 50719780 - 50719693
Alignment:
Q  329 ttaaaattaatgaaataggaccaaattgaatgaaggaaacaagaaaaatgaccaaattgaaa-ggtttagtagtgagtggaccaattt 415  Q
    |||||||| || |||||| |||||||||||||| |||||||||| ||| ||||||||||||| |||||| |||| | |||||||||||    
T  50719780 ttaaaattgataaaatagaaccaaattgaatgatggaaacaagacaaaggaccaaattgaaacggtttaatagttaatggaccaattt 50719693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 415
Target Start/End: Original strand, 50793068 - 50793155
Alignment:
Q  329 ttaaaattaatgaaataggaccaaattgaatgaaggaaacaagaaaaatgaccaaattgaaa-ggtttagtagtgagtggaccaattt 415  Q
    |||||||| || |||||| |||||||||||||| |||||||||| ||| ||||||||||||| |||||| |||| | |||||||||||    
T  50793068 ttaaaattgataaaatagaaccaaattgaatgatggaaacaagacaaaggaccaaattgaaacggtttaatagttaatggaccaattt 50793155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 50003141 - 50003243
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||  |||||||||||||| |||||||||||| |||||  |||||||| ||||||  |||||   | | ||||||||||| ||||||||||||||    
T  50003141 ataaattatgtgttggtgatacaccgttagatctgattgacctcctttatccaacggtcttatttttaaggagtttaaaattaataaaataggaccaaat 50003240  T
Q  355 tga 357  Q
    |||    
T  50003241 tga 50003243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 2764003 - 2764104
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  ||||||||||||| |||||||||| | ||| ||  |||||||| ||||||||||||||  | |||||||||| | |||||||||| |||    
T  2764003 aataaattaagtgttggtgatacatggttagatctcacagatctcctttatccaacggtctccttttttaggagattaaaattgacgaaataggactaaa 2764102  T
Q  354 tt 355  Q
    ||    
T  2764103 tt 2764104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 44115636 - 44115535
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||| | ||||||||||| | |||||||| | | ||||  |||||||| ||||||||||||||  | |||||||||||| |||||||||| |||    
T  44115636 aataaattaggtattggtgatacatgattagatctcacaaacctcctttatccaacggtctccttttttaggagattaaaattaacgaaataggactaaa 44115537  T
Q  354 tt 355  Q
    ||    
T  44115536 tt 44115535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 27225631 - 27225529
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||| ||| ||||||||||  ||||||||||| ||| |  |||||||| |||||| ||||||  | || ||||||||||| ||||||||| ||||    
T  27225631 ataaattaggtgtcggtgatacacctttagatctgatggactttctttatccaacggtcttctttttgaaaggtttaaaattaataaaataggactaaat 27225532  T
Q  355 tga 357  Q
    |||    
T  27225531 tga 27225529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 2762988 - 2762887
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||| | ||||||||||| | |||||||| | | ||||  |||||||| ||||||||||||||  | |||||||||||| |||||| ||| |||    
T  2762988 aataaattaggtattggtgatacatgattagatctcacatacctcttttatccaacggtctccttttttaggagattaaaattaacgaaatatgactaaa 2762889  T
Q  354 tt 355  Q
    ||    
T  2762888 tt 2762887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 28777600 - 28777706
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||| ||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  28777600 aaataaattaggtgttgatgatacactataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 28777699  T
Q  353 attgaat 359  Q
    |||||||    
T  28777700 attgaat 28777706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 37610676 - 37610782
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | ||||| ||||||  ||||||  |||||||||||||   |||| |||||||    
T  37610676 aaataaattaggtgttggtgatacactataaaatctgatagacctccgtaatccaacggtctttttttttaggggattaaaattatcaaaattggaccaa 37610775  T
Q  353 attgaat 359  Q
    |||||||    
T  37610776 attgaat 37610782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 43393966 - 43394072
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| |||||||||||||| || | |||||||||||||   | ||||| ||||||| ||||||  ||| |||||||||   |||| |||||||    
T  43393966 aaataaattaggtgttggtgatacactgtaaaatctgatagacctccgtaatccaacggtctctttttttagggggttaaaattatcaaaattggaccaa 43394065  T
Q  353 attgaat 359  Q
     ||||||    
T  43394066 tttgaat 43394072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 44116599 - 44116700
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  ||||||||||||| | ||| ||||   ||||||  |||||||| ||||||||||||||  | |||||||||| | |||||||||| |||    
T  44116599 aataaattaagtgttggtgatacatgtttaaatctcccagacctcctttatccaacggtctccttttttaggagattaaaattgacgaaataggactaaa 44116698  T
Q  354 tt 355  Q
    ||    
T  44116699 tt 44116700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 359
Target Start/End: Original strand, 53180718 - 53180823
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||| ||||||||||||||  |   |||||||||||||   | ||||| ||||||||||||||   |||||||||||| | |||| |||| |||    
T  53180718 aataaattaggtgttggtgatacactatacaatctgatagacctccgtaatccaacggtctccttttttagaggattaaaattattaaaattggactaaa 53180817  T
Q  354 ttgaat 359  Q
    ||||||    
T  53180818 ttgaat 53180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 54353221 - 54353124
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    |||| |||| |||||||||| | | |||||||||||||   | ||||| ||||||| ||||||| |||||||||||||   |||| ||||||||||||    
T  54353221 ttaggtgttagtgatacacgataaaatctgatagaccttcgtaatccaacggtctctttttttcggggattaaaattataaaaattggaccaaattga 54353124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 27226467 - 27226559
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    |||||||||  ||| ||||||||| || |||||  |||||||| || ||| ||||||   ||| ||||||||||| |||||||||||||||||    
T  27226467 tgttggtgacgcactgttagatcttatggacctcctttatccaacgatcttctttttgaggggtttaaaattaataaaataggaccaaattga 27226559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 39531740 - 39531834
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaat 354  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  39531740 ttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttctttttt-agggatttaaaattaataaaattggaccaaat 39531834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 5384615 - 5384517
Alignment:
Q  259 attagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    ||||| |||| ||||||||| |||| |||||||  |||| ||||||||  |||||| ||||||    || ||||||||||| |||| ||||||||||||    
T  5384615 attaggtgttagtgatacaccgttaaatctgatgaacctcatttatcccacggtcttctttttaagaggtttaaaattaataaaattggaccaaattga 5384517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 21248175 - 21248273
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    ||||||||  |||||||||||||| |||||||| ||| |||||  || ||||| | |||| ||||||    || ||||||||||| |||||||||||||    
T  21248175 ataaattatgtgttggtgatacaccgttagatccgatggacctccttaatccaacagtcttctttttaagaggtttaaaattaataaaataggaccaaa 21248273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 31937236 - 31937134
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||||| ||||||||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||| ||    
T  31937236 aaattaggtgttggtgatacactataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaaaatg 31937137  T
Q  357 aat 359  Q
    |||    
T  31937136 aat 31937134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 31938224 - 31938326
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||||| ||||||||||||||  | | |||| ||||||||   | ||||| ||||||| ||||||  ||||||||||||| | |||| |||| ||||||    
T  31938224 aaattaggtgttggtgatacactataaaatcttatagaccttcgtaatccaacggtctctttttttaggggattaaaattattaaaattggactaaattg 31938323  T
Q  357 aat 359  Q
    |||    
T  31938324 aat 31938326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 33000724 - 33000818
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| ||||||||| ||||    
T  33000724 ttaggtgttggtgatacacggttagatatgatgtacttcctttatccaacggtcttcttttttttggatttcaaattaataaaataggactaaat 33000818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 37609526 - 37609420
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||| ||| ||||  ||| |||| ||||||||   | ||||| ||||||| ||||||  ||||||||||||| | |||| ||| |||    
T  37609526 aaataaattaggtgttgatgagacactattaaatcttatagacctccctaatccaacggtctctttttttaggggattaaaattattaaaattggatcaa 37609427  T
Q  353 attgaat 359  Q
    |||||||    
T  37609426 attgaat 37609420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 39530987 - 39530893
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| ||||||||  |||||||||||| ||||  || |  |||||||| |||||| ||||||  ||| |||||||||||| ||||| ||||||||    
T  39530987 ttaggtgttggtggcacacggttagatatgatgaactttctttatccaacggtcttctttttaaaggaattaaaattaataaaatatgaccaaat 39530893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 45730829 - 45730735
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| ||||||||| ||||    
T  45730829 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggactaaat 45730735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 47431100 - 47431205
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||| ||||||||||  | | |||| ||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  47431100 aaataaattaggtgtgggtgatacactataaaatctaatagacctccataatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 47431199  T
Q  353 attgaa 358  Q
    ||||||    
T  47431200 attgaa 47431205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 49486085 - 49486056
Alignment:
Q  113 ttttttggtggatctgattagtgatatgaa 142  Q
    ||||||||||||||||||||||||||||||    
T  49486085 ttttttggtggatctgattagtgatatgaa 49486056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 118; Significance: 9e-60; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 505 - 790
Target Start/End: Original strand, 14603 - 14888
Alignment:
Q  505 cttggtacaatttgtgggtttaaaagagataatgttctttagggtgtcataaccaactaaaaagttttgttgagctatgttcccatatacgacccaagga 604  Q
    ||||||||||| | | || ||||||||||||||||| || ||||| ||| | ||||| |||||||||||||| ||||  |||||||||| |||  | |||    
T  14603 cttggtacaatcttttggcttaaaagagataatgttgttcagggtatcaaagccaaccaaaaagttttgttgtgctacattcccatatatgacaaaggga 14702  T
Q  605 aatacacttgaattaaaagcaaaacacataacctcatgattcatttgaataaaggtgttaaaagcattcaacttgacatcagcaccacgaaaatgtgctg 704  Q
    |  | |  |||| |||||||||| ||||||| ||| ||||| |||| |||||||||||||| |||||||||| |||||| ||||||||||||||| ||||    
T  14703 acgatagatgaactaaaagcaaagcacataatctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctg 14802  T
Q  705 tgattatcggcacctcgtattttttcaatgttgttttgtaacaaagactcaattgttgagtagggtctttaacacgctttaactta 790  Q
    | |||||||| |||| || | |||||||||||| |||||| |||||||||||||||||| |||| || ||||||||||||||||||    
T  14803 ttattatcggaaccttgtctattttcaatgttgatttgtagcaaagactcaattgttgattaggatccttaacacgctttaactta 14888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 11080946 - 11081107
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| |||||||||  |||||||||||||  | | ||||||| ||||||||||||||    
T  11080946 taaaataaatcaggtgttggtgatacacagttagatctgatagacctcatttatccaaaggtctccttttttttgaggttaaaatgaatgaaataggacc 11081045  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||||||| ||||| |||| ||| |||||| ||| || ||||| |||| || |||||||    
T  11081046 aaattgaatgatggaaagaagataaaggaccaatttggaacgtttaatagttagaggaccaa 11081107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 35462903 - 35463007
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||| || ||||||||||  | |  ||||||||||  ||||||||||    
T  35462903 taaaataaattaggtgttggtgatacactgttagatcagatagacctcatttatccaacgatctcctttttaaatgagttaaaattaacaaaataggacc 35463002  T
Q  351 aaatt 355  Q
    |||||    
T  35463003 aaatt 35463007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 20066277 - 20066174
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||| |||||||||||||| |||| ||||||| || ||  |||||||| ||||||| |||||| |||  |||||||||| ||||||||||||||    
T  20066277 aataaattaggtgttggtgatacactgttaaatctgatggatctcttttatccaacggtctctttttttaaggagttaaaattaaggaaataggaccaaa 20066178  T
Q  354 ttga 357  Q
    ||||    
T  20066177 ttga 20066174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 35462849 - 35462765
Alignment:
Q  271 tgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaatt 355  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||  | |  ||||||||||  |||||||||||||||    
T  35462849 tgatacacggttagatctgatagacctcgtttatccaacggtctcctttttaaatgagttaaaattaacaaaataggaccaaatt 35462765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 44770532 - 44770634
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||  ||| ||| |||||| |||||||| ||||||||| ||||||||| |||||| ||||||   ||| ||||||||||| |||||||| |||||    
T  44770532 ataaattatgtgtcggttatacactgttagatccgatagacctcatttatccaacggtcttctttttaaggggtttaaaattaataaaataggatcaaat 44770631  T
Q  355 tga 357  Q
    |||    
T  44770632 tga 44770634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 12820013 - 12820116
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggac 349  Q
    ||||||||||||| |||||||||||||| ||||||| ||||  ||||  |||||||| |||||| | ||||| || || ||||||||||| |||||||||    
T  12820013 taaaataaattaggtgttggtgatacacagttagatatgatgaacctcctttatccaacggtcttc-tttttgagagatttaaaattaataaaataggac 12820111  T
Q  350 caaat 354  Q
    |||||    
T  12820112 caaat 12820116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 401
Target Start/End: Complemental strand, 9189586 - 9189446
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattgaa 358  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| ||||| |||||||||| |    
T  9189586 ttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttctttttt-agggatttaaaattaataaaatatgaccaaattg-a 9189489  T
Q  359 tgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    |||  |||||||  | || ||||||||||||| ||||| ||||    
T  9189488 tgacagaaacaaagataaggaccaaattgaaacgtttaatagt 9189446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 4534953 - 4535088
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaat 359  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| |||||||| ||||||| ||    
T  4534953 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggatcaaattg-at 4535051  T
Q  360 gaaggaaacaagaaaaatgaccaaattgaaaggttta 396  Q
    || | ||||||  | || ||||||||||||| |||||    
T  4535052 gacgaaaacaaagataaggaccaaattgaaacgttta 4535088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 4534221 - 4534097
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattgaatgaag 363  Q
    ||||||||||||||||| |||| ||||  || |  ||||||||  ||||| ||||||| ||||||| ||||||||| |||||||||||||||| |||| |    
T  4534221 tgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctactttttt-agggatttaaaattaataaaataggaccaaattg-atgacg 4534124  T
Q  364 gaaacaagaaaaatgaccaaattgaaa 390  Q
     ||||||  | || |||||||||||||    
T  4534123 aaaacaaagataaggaccaaattgaaa 4534097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 9244270 - 9244164
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | ||||  ||||||| |||||| ||||||||||||||   |||| | |||||    
T  9244270 aaataaattaggtgttggtgatacactataaaatctgatagacctccgtaatcctacggtctcattttttaagggattaaaattatcaaaattgaaccaa 9244171  T
Q  353 attgaat 359  Q
    |||||||    
T  9244170 attgaat 9244164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 9245344 - 9245450
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | ||||||||||||| |   ||||| ||||||| ||||||  |||||||||||||   |||| |||| ||    
T  9245344 aaataaattaggtgttggtgatacactataaaatctgatagacctcagcaatccaacggtctctttttttaggggattaaaattataaaaattggactaa 9245443  T
Q  353 attgaat 359  Q
    |||||||    
T  9245444 attgaat 9245450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 16346291 - 16346197
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| ||||||||||||||    
T  16346291 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaat 16346197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 22914114 - 22914208
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| ||||||||||||||    
T  22914114 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaat 22914208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 30641002 - 30640896
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | || ||||||||||   | ||||| ||||||| ||||||  ||||||||||||| | |||| ||| |||    
T  30641002 aaataaattaggtgttggtgatacactataaaatttgatagacctccgtaatccaacggtctctttttttaggggattaaaattattaaaattggatcaa 30640903  T
Q  353 attgaat 359  Q
    |||||||    
T  30640902 attgaat 30640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 41637036 - 41636930
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||| | | ||||||||||| |   | ||||| ||||||| ||||||  |||||||||||||   || | |||||||    
T  41637036 aaataaattaggtgttggtgatacacgataaaatctgatagacttccgtaatccaacggtctctttttttaggggattaaaattataaaagttggaccaa 41636937  T
Q  353 attgaat 359  Q
    |||||||    
T  41636936 attgaat 41636930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 20067152 - 20067255
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaa 352  Q
    |||||||||| ||||| |||||||  |||| ||||||| ||| |  |||||  | |||||||||||||| ||||| ||||||||||||||||||||  ||    
T  20067152 aataaattaggtgttgatgatacatcgttaaatctgatggacttcctttatttaacggtctcctttttt-agggagttaaaattaatgaaataggaataa 20067250  T
Q  353 attga 357  Q
    |||||    
T  20067251 attga 20067255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 9190366 - 9190460
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaat 354  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  9190366 ttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttctttttt-agggatttaaaattaataaaattggaccaaat 9190460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 20309128 - 20309022
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| | ||||||||||||  | | ||||||||||||| | | ||||| ||||||| |||| |  ||||| |||||||   |||| |||||||    
T  20309128 aaataaattaggtattggtgatacactataaaatctgatagacctcagtgatccaacggtctctttttctaggggatcaaaattatcaaaattggaccaa 20309029  T
Q  353 attgaat 359  Q
    |||||||    
T  20309028 attgaat 20309022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 21095761 - 21095655
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| | ||||||||||||  | | ||||||||||||| | | ||||| ||||||| |||| |  ||||| |||||||   |||| |||||||    
T  21095761 aaataaattaggtattggtgatacactataaaatctgatagacctcagtgatccaacggtctctttttctaggggatcaaaattatcaaaattggaccaa 21095662  T
Q  353 attgaat 359  Q
    |||||||    
T  21095661 attgaat 21095655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 41767082 - 41767180
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    ||||||||  |||||||||||||| |||||||| ||| |||||  || ||||| | |||| ||||||    || ||||||||||| |||||||||||||    
T  41767082 ataaattatgtgttggtgatacaccgttagatccgatggacctccttaatccaacagtcttctttttaagaggtttaaaattaataaaataggaccaaa 41767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1337 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold1337
Description:

Target: scaffold1337; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 255 - 389
Target Start/End: Complemental strand, 431 - 296
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagg-gattaaaattaatgaaataggaccaaa 353  Q
    ||||||||| |||||||||||||||||||||| ||| ||| || ||||||||| ||||| | |||||| | | |||||||||||||||||||||||||||    
T  431 ataaattaggtgttggtgatacacggttagatatgacagatctcatttatccaacggtcacatttttttaagagattaaaattaatgaaataggaccaaa 332  T
Q  354 ttgaatgaaggaaacaagaaaaatgaccaaattgaa 389  Q
    |||||||| |||||||||||||| || |||||||||    
T  331 ttgaatgatggaaacaagaaaaaggatcaaattgaa 296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 682467 - 682306
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| |  |||||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||   |||||||||| ||| ||||| ||||    
T  682467 taaaataaatcaagtgttggtgatacacagctagatctgatagacctcatttatccaacggtctcctttttttgtggattaaaatgaataaaataagacc 682368  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||||||| ||||| |||| |||||||||| ||| || ||||| |||| || |||||||    
T  682367 aaattgaatgatggaaagaagataaatgaccaatttggaacgtttaatagttagaggaccaa 682306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 251 - 396
Target Start/End: Original strand, 683456 - 683599
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| || |||||| |||| || |||||||||||||||||| |||||| || ||||||| ||||||   |||||||||| ||| |||| |||||    
T  683456 taaaataaatcaggtgttggagatatacagttagatctgatagacctcatttattcaacggtctctttttttt--ggattaaaatgaataaaatgggacc 683553  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggttta 396  Q
    ||||||||||||||||| |||| ||| |||||| |||||| |||||    
T  683554 aaattgaatgaaggaaagaagataaaagaccaatttgaaacgttta 683599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 13562214 - 13562314
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||| |||||||||||||| |||||||||||| || ||  |||||||| | |||| |||||||  | | ||||||||||| ||||||||||||||    
T  13562214 ataaattaggtgttggtgatacactgttagatctgatggatctcctttatccaacagtcttcttttttaggagtttaaaattaataaaataggaccaaat 13562313  T
Q  355 t 355  Q
    |    
T  13562314 t 13562314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 13561476 - 13561374
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||  |||||||| || ||| ||||||   | | ||||||||||| ||||||||||||||    
T  13561476 ataaattaggtgttggtgatacactattagatctgatggaccttctttatccaacgatcttctttttgaggagtttaaaattaataaaataggaccaaat 13561377  T
Q  355 tga 357  Q
    |||    
T  13561376 tga 13561374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 1757423 - 1757512
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaaat 354  Q
    |||||||||||||||||||||| ||||  || || |||||||| |||||| | ||||| ||||| ||||||||||| ||||||||||||||    
T  1757423 tgttggtgatacacggttagatatgatgaacttactttatccaacggtcttc-tttttgagggatttaaaattaataaaataggaccaaat 1757512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 34995556 - 34995450
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||||||||||||||||||  | | |||||||||||||   | ||| | ||||||  ||||||  ||||||||||||| | |||| |||||||    
T  34995556 aaataaattagatgttggtgatacactataaaatctgatagaccttcgtaatctaacggtctgtttttttaggggattaaaattattaaaattggaccaa 34995457  T
Q  353 attgaat 359  Q
    |||||||    
T  34995456 attgaat 34995450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 414
Target Start/End: Complemental strand, 10673807 - 10673648
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||| || |||||||||||  |||||| |||| |||||  ||||| || |||||| ||||||  | || ||||||||||| ||||||||| ||||    
T  10673807 ataaattaggtggtggtgatacacctttagatatgatggacctcctttattcaacggtcttctttttgaaaggtttaaaattaataaaataggactaaat 10673708  T
Q  355 tgaatgaaggaaac-aagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaatt 414  Q
    || |||| | |||| || | ||| ||||||||||||| ||||| |||| |  |||||||||    
T  10673707 tg-atgacgaaaacaaacataaaggaccaaattgaaacgtttattagttaagggaccaatt 10673648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 32348950 - 32349056
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||| ||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  32348950 aaataaattaggtgttgatgatacactataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 32349049  T
Q  353 attgaat 359  Q
    |||||||    
T  32349050 attgaat 32349056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 32713796 - 32713902
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| |||||||||||||| || | |||| ||||||||   | ||||| ||||| | ||||||  |||||||||||||   |||| |||||||    
T  32713796 aaataaattaggtgttggtgatacactgtaaaatcttatagacctccgtaatccaacggtcactttttttaggggattaaaattatcaaaattggaccaa 32713895  T
Q  353 attgaat 359  Q
    |||||||    
T  32713896 attgaat 32713902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 11724220 - 11724360
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaaattgaa 358  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||| ||||||| ||| ||||| || ||||||| |    
T  11724220 ttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttctttttt-agggatttaaaatcaataaaatatgatcaaattg-a 11724317  T
Q  359 tgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||| | ||||||  | || ||||||||||||| ||||| ||||    
T  11724318 tgacgaaaacaaagataaggaccaaattgaaacgtttaatagt 11724360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 18499817 - 18499923
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||  ||||| ||||| || || ||||||||||||| | |||||||   |||||||||||||    | || |||||||| ||||||| |||    
T  18499817 taaaataaattaagtgttgttgatatactgtaagatctgatagacatcatttatctgacggtctcctttttgagagaatcaaaattaacgaaatagtacc 18499916  T
Q  351 aaattga 357  Q
    |||||||    
T  18499917 aaattga 18499923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 34996674 - 34996780
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | ||||| ||||||  ||||||  | |||||||||||   |||| |||||||    
T  34996674 aaataaattaggtgttggtgatacactataaaatctgatagaccttcgtaatccaacggtctgtttttttaggagattaaaattatcaaaattggaccaa 34996773  T
Q  353 attgaat 359  Q
    |||||||    
T  34996774 attgaat 34996780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 27107368 - 27107244
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaagg 364  Q
    ||||||||||||||||| |||| ||||  || |  ||||||||  ||||| | |||||  ||  ||||||||||| |||||||||||||||| |||| |     
T  27107368 tgttggtgatacacggtaagatatgatgaacttcttttatccaatggtctacatttttatggatttaaaattaataaaataggaccaaattg-atgacga 27107270  T
Q  365 aaacaagaaaaatgaccaaattgaaa 390  Q
    ||||||  | || |||||||||||||    
T  27107269 aaacaaagataaggaccaaattgaaa 27107244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 27149174 - 27149050
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaagg 364  Q
    ||||||||||||||||| |||| ||||  || |  ||||||||  ||||| | |||||  ||  ||||||||||| |||||||||||||||| |||| |     
T  27149174 tgttggtgatacacggtaagatatgatgaacttcttttatccaatggtctacatttttatggatttaaaattaataaaataggaccaaattg-atgacga 27149076  T
Q  365 aaacaagaaaaatgaccaaattgaaa 390  Q
    ||||||  | || |||||||||||||    
T  27149075 aaacaaagataaggaccaaattgaaa 27149050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 14357796 - 14357926
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||| | || |||||||||||||| ||||||| ||||||| || ||||||||| ||||||||||||||  ||| ||||||||||| ||||||||||    
T  14357796 taaaataattcaggtgttggtgatacacagttagatatgatagatctcatttatccaacggtctcctttttttgggggttaaaattaataaaataggacc 14357895  T
Q  351 aaattgaatgaaggaaacaagaaaaatgacc 381  Q
    ||||||||||| ||||| |||| ||||||||    
T  14357896 aaattgaatgatggaaagaagataaatgacc 14357926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 251 - 382
Target Start/End: Original strand, 30916032 - 30916163
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||  | | ||||||| ||||||||| ||||    
T  30916032 taaaataaatcaggtgttggtaatacacagttagatctgatagacctaatttatccaatggtctcctttttttggaggttaaaatgaatgaaatatgacc 30916131  T
Q  351 aaattgaatgaaggaaacaagaaaaatgacca 382  Q
    ||||||||||| ||||| |||| ||| |||||    
T  30916132 aaattgaatgatggaaagaagataaaagacca 30916163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 33362481 - 33362642
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagg-gattaaaattaatgaaataggac 349  Q
    |||||||||| || | |||||||||||| |||||||||||||||||| |||||||||  |||||||||||||   | | ||||||| |||||||||||||    
T  33362481 taaaataaataaggtattggtgatacacagttagatctgatagacctcatttatccaatggtctcctttttttttgaggttaaaatgaatgaaataggac 33362580  T
Q  350 caaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    |||||||||||| ||||| |||| ||| |||||| |||||| ||||| |||| || |||||||    
T  33362581 caaattgaatgatggaaagaagataaaggaccaatttgaaa-gtttaatagttagaggaccaa 33362642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 38603668 - 38603770
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||||| || ||||||||||||||  ||||||||||| |||||  |||||||| |||||| |||||||  | | ||||||||||| ||||||||||||||    
T  38603668 ataaatgaggtgttggtgatacactattagatctgatggaccttctttatccaacggtcttcttttttaggagtttaaaattaataaaataggaccaaat 38603767  T
Q  355 tga 357  Q
    |||    
T  38603768 tga 38603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 14356633 - 14356502
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| || ||||||||||||||  |||||| |||||||||| ||| |||||  |||||| ||||||  | | ||||||| ||| |||||||| |    
T  14356633 taaaataaatcaggtgttggtgatacacaattagatgtgatagacctcattcatccaatggtctctttttttttgag-ttaaaatgaataaaataggatc 14356535  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaa 383  Q
    ||||||||||| ||||| |||| ||| ||||||    
T  14356534 aaattgaatgatggaaagaagataaacgaccaa 14356502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 30674746 - 30674850
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||  ||||| || ||||||||||||||  | |||||||||| |  ||||||||| ||    
T  30674746 aaataaattaggtgttggtgatacatggttagatcttacagacctcctttattcaacggtctccttttttaggagattaaaattgacaaaataggactaa 30674845  T
Q  353 attga 357  Q
    |||||    
T  30674846 attga 30674850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 30915699 - 30915628
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctttttt 322  Q
    |||||||||| || |||||||||||||| |||||||||||||||||| || ||||||  |||||||||||||    
T  30915699 taaaataaatcaggtgttggtgatacacagttagatctgatagacctcatatatccaatggtctcctttttt 30915628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 42962218 - 42962119
Alignment:
Q  258 aattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    |||||| ||||||||||||||  |||||||| ||||||||  |||||||| |||||| ||||||    || ||||||||||| |||||||||||||||||    
T  42962218 aattaggtgttggtgatacaccattagatcttatagacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaataggaccaaattga 42962119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 265 - 390
Target Start/End: Original strand, 39135577 - 39135701
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaagg 364  Q
    ||||||||||||||||| |||| ||||  || |  ||||||||  ||||| |||||||  ||  ||||||||||| |||||||||||||||| |||| |     
T  39135577 tgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctacttttttggggatttaaaattaataaaataggaccaaattg-atgagga 39135675  T
Q  365 aaacaagaaaaatgaccaaattgaaa 390  Q
    ||||||  | ||||||||||||||||    
T  39135676 aaacaaagataatgaccaaattgaaa 39135701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 9038578 - 9038518
Alignment:
Q  336 taatgaaataggaccaaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggttta 396  Q
    |||||||||||||||||||||||| | |||||||||| ||| ||| ||||||||| |||||    
T  9038578 taatgaaataggaccaaattgaattatggaaacaagataaaagactaaattgaaatgttta 9038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 39051591 - 39051692
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagg-gattaaaattaatgaaataggaccaaa 353  Q
    ||||||||| ||||| ||||||||  ||||||||||| |||||  |||||| ||||||||  |||||| ||| | ||||||||||| |||||||| ||||    
T  39051591 ataaattaggtgttgatgatacactattagatctgatggaccttctttatctagcggtct--ttttttgaggagtttaaaattaataaaataggatcaaa 39051688  T
Q  354 ttga 357  Q
    ||||    
T  39051689 ttga 39051692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 30673520 - 30673416
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||| ||||| |||| | | ||||  |||||||| |||||||| |||||    |||||||||| | |||||||||  ||    
T  30673520 aaataaattaggtgttggtgatacatggttaaatctcacaaacctcctttatccaacggtctccctttttagaagattaaaattgacgaaataggattaa 30673421  T
Q  353 attga 357  Q
    |||||    
T  30673420 attga 30673416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 1011985 - 1012076
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||| |||||||| |||||||||  |||||||  |||||| | |||||| |||||||   ||||||||||| || |||| |||||||||||    
T  1011985 tgttgatgatacaccgttagatctcgtagacctcctttatcaaacggtcttcttttttataggattaaaattgattaaattggaccaaattg 1012076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 9083216 - 9083315
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaat 359  Q
    |||| ||||||||||||||  | | |||| ||||||||   | ||||| ||||||||||||||  |||||||||||||   |||| ||||||||||||||    
T  9083216 ttaggtgttggtgatacactataaaatcttatagaccttcgtaatccaacggtctccttttttaggggattaaaattatcaaaattggaccaaattgaat 9083315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 415
Target Start/End: Original strand, 42963207 - 42963293
Alignment:
Q  329 ttaaaattaatgaaataggaccaaattgaatgaaggaaacaa-gaaaaatgaccaaattgaaaggtttagtagtgagtggaccaattt 415  Q
    ||||||||||| ||||||||  ||||||| ||| | |||||| || ||||||||||||||||| ||||| |||| || ||||||||||    
T  42963207 ttaaaattaataaaataggattaaattga-tgatgaaaacaaagataaatgaccaaattgaaacgtttaatagttagaggaccaattt 42963293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 390
Target Start/End: Original strand, 11907090 - 11907214
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattgaatgaag 363  Q
    ||||||||||||||||| |||| ||||  || |  ||||||||  ||||| ||||||| ||||||| ||||||||| ||||| |||||||||| |||| |    
T  11907090 tgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctactttttt-agggatttaaaattaataaaatatgaccaaattg-atgacg 11907187  T
Q  364 gaaacaagaaaaatgaccaaattgaaa 390  Q
     ||||||  | || |||||||||||||    
T  11907188 aaaacaaagataaggaccaaattgaaa 11907214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 19229043 - 19228937
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||| ||||||||  | | |||| ||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  19229043 aaataaattaggtgttgatgatacactataaaatctaatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 19228944  T
Q  353 attgaat 359  Q
    |||||||    
T  19228943 attgaat 19228937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 25212948 - 25213042
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaatagga 348  Q
    |||||||||| | ||||||||||| | |||||||| | | ||||  |||||||| |||||| |||||||  | |||||||||| | |||||||||    
T  25212948 aataaattaggtattggtgatacatgattagatctcacaaacctcctttatccaacggtcttcttttttaggagattaaaattgacgaaatagga 25213042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 25277100 - 25277194
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaatagga 348  Q
    |||||||||| | ||||||||||| | |||||||| | | ||||  |||||||| |||||| |||||||  | |||||||||| | |||||||||    
T  25277100 aataaattaggtattggtgatacatgattagatctcacaaacctcctttatccaacggtcttcttttttaggagattaaaattgacgaaatagga 25277194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 39134859 - 39134762
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaaattga 357  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||| | ||||||| ||||| || |||||||| |||||| ||||||||||    
T  39134859 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtattctttttt-agggatttcaaattaataaaatagcaccaaattga 39134762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 39350562 - 39350660
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaatt 355  Q
    ||||||| |||||||||||||| || | |||||||||||||   | ||||| ||||||| ||||||   ||||||||||||   |||| ||||||||||    
T  39350562 aaattaggtgttggtgatacactgtaaaatctgatagacctccgtaatccaacggtctctttttttagaggattaaaattataaaaattggaccaaatt 39350660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 13278144 - 13278249
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | ||||| ||||||| |||| |  |||||||||||||   |||| ||| |||    
T  13278144 aaataaattaggtgttggtgatacactataaaatctgatagacctccctaatccaacggtctctttttctatgggattaaaattatcaaaattggatcaa 13278243  T
Q  353 attgaa 358  Q
    ||||||    
T  13278244 attgaa 13278249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 254 - 412
Target Start/End: Complemental strand, 54372945 - 54372787
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    ||||||| || |||||||||||||| ||||||||| |||||||| ||||||||| |||||||||||| |  ||| ||||||| ||| |||||||||||||    
T  54372945 aataaatcaggtgttggtgatacacagttagatctaatagacctcatttatccaacggtctccttttcttgggggttaaaatgaataaaataggaccaaa 54372846  T
Q  354 ttgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    |||||||| ||||| |||| ||| |||||| ||| || ||||| |||| || |||||||    
T  54372845 ttgaatgatggaaagaagataaaggaccaatttggaacgtttaatagttagaggaccaa 54372787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 401
Target Start/End: Original strand, 20945391 - 20945541
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||| || ||||||||| |||||  |||||||  | | ||||||||||||||||||||||    
T  20945391 taaaataaattaggtgttggtgatacacagttagatctaatagaactcatttatccaacggtcctcttttttaggaggttaaaattaatgaaataggacc 20945490  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    || |||||||| ||||| |||| |||  |||||| ||||| ||||| ||||    
T  20945491 aagttgaatgatggaaataagagaaagaaccaaaatgaaacgtttaatagt 20945541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 254 - 412
Target Start/End: Original strand, 54373869 - 54374027
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    ||||||| || |||||||||||||| ||||||||| |||||||| |||||||||| ||||||||||| |  ||| ||||||| ||| |||||||||||||    
T  54373869 aataaatcaggtgttggtgatacacagttagatcttatagacctcatttatccagtggtctccttttcttgggggttaaaatgaataaaataggaccaaa 54373968  T
Q  354 ttgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    |||||||| ||||| |||| ||| |||||| ||  || ||||| |||| || |||||||    
T  54373969 ttgaatgatggaaagaagataaaggaccaatttagaacgtttaatagttaggggaccaa 54374027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 251 - 401
Target Start/End: Original strand, 49923679 - 49923829
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctttt-ttcagggattaaaattaatgaaataggac 349  Q
    |||||||||| |  |||||||||||||| |||||||||||||||||| || |||||| |||||||||||| || |||| ||||||| ||| ||||||| |    
T  49923679 taaaataaatcacgtgttggtgatacacagttagatctgatagacctcatctatccaacggtctccttttcttgaggg-ttaaaataaataaaatagggc 49923777  T
Q  350 caaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    |||||||||||| | ||| |||| ||| |||||| |||||| ||||| ||||    
T  49923778 caaattgaatgatgaaaagaagataaaggaccaatttgaaacgtttaatagt 49923829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 401
Target Start/End: Original strand, 37642457 - 37642605
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagg-gattaaaattaatgaaataggaccaa 352  Q
    ||||||| || ||||||||||||||  |||||||||||| |||| |||||||||  |||||||||||||  || | ||||||| ||||||||||||||||    
T  37642457 aataaatcaggtgttggtgatacacaattagatctgataaacctcatttatccaatggtctccttttttttggaggttaaaatgaatgaaataggaccaa 37642556  T
Q  353 attgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||||||||| ||||| |||| ||| ||| |  |||||| ||||| ||||    
T  37642557 attgaatgatggaaagaagataaaggactattttgaaacgtttaatagt 37642605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 254 - 369
Target Start/End: Complemental strand, 17522013 - 17521898
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  |||||||||||||| ||||||||| ||||||||  ||||||||  ||||| |||||||  |||||||||||| | ||||||||||||||    
T  17522013 aataaattaagtgttggtgatacactgttagatctcatagaccttgtttatccaatggtcttcttttttaggggattaaaattgacgaaataggaccaaa 17521914  T
Q  354 ttgaatgaaggaaaca 369  Q
    |||| ||| |||||||    
T  17521913 ttgactgatggaaaca 17521898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 268 - 414
Target Start/End: Original strand, 21570354 - 21570500
Alignment:
Q  268 tggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaaggaaa 367  Q
    |||||||||||| |||||||||||||||||  |||||||| |||||| ||||||    || ||||||||||| |||||||| ||||||| |||| | |||    
T  21570354 tggtgatacacgattagatctgatagacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaataggatcaaattg-atgatgaaaa 21570452  T
Q  368 c-aagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaatt 414  Q
    | |||| ||||||||||||||||| ||||| |||| || |||||||||    
T  21570453 caaagataaatgaccaaattgaaacgtttaatagttaggggaccaatt 21570500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 361
Target Start/End: Complemental strand, 20944478 - 20944368
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| || ||||||||| || ||  |||||||  | | ||||||||||||||||| ||||    
T  20944478 taaaataaattaggtgttggtgatacacggttagatctaatagatctcatttatccaacgatcctcttttttaggaggttaaaattaatgaaatatgacc 20944379  T
Q  351 aaattgaatga 361  Q
    ||||| |||||    
T  20944378 aaattaaatga 20944368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 251 - 396
Target Start/End: Complemental strand, 49922709 - 49922564
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctttt-ttcagggattaaaattaatgaaataggac 349  Q
    |||||||||| |  |||||||| ||||| |||||||||||||||||| || |||||| ||||||| |||| || |||| ||||||| ||| |||||||      
T  49922709 taaaataaatcatgtgttggtgctacacagttagatctgatagacctcatctatccaacggtctcattttcttgaggg-ttaaaatgaataaaatagggt 49922611  T
Q  350 caaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggttta 396  Q
    ||||||||||||  |||| |||| ||| |||||| |||||| |||||    
T  49922610 caaattgaatgacagaaagaagataaaagaccaatttgaaatgttta 49922564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 31204752 - 31204650
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||  |||||||||||||| |||||||||||| ||| |  |||||||| |||||| ||||||   | | ||||||||||| ||||||||||||||    
T  31204752 ataaattatgtgttggtgatacactgttagatctgatggacatcctttatccaacggtcttctttttaaggagtttaaaattaataaaataggaccaaat 31204653  T
Q  355 tga 357  Q
    |||    
T  31204652 tga 31204650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 17522473 - 17522574
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| ||| ||||||||||  |||||||| ||||||||  ||| |||| ||||||||| ||||  | | |||||||| |||||||||||||    
T  17522473 taaaataaattaggtgtcggtgatacactcttagatcttatagacctcctttttccaacggtctcctgttttaggaggttaaaattgatgaaataggacc 17522572  T
Q  351 aa 352  Q
    ||    
T  17522573 aa 17522574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 259 - 414
Target Start/End: Complemental strand, 21569444 - 21569289
Alignment:
Q  259 attagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaa 358  Q
    ||||| |||| ||||||||| |||||||||||| |||||  |||||||| |||||| ||||||    || ||||||||||| ||||| ||  |||| | |    
T  21569444 attaggtgttagtgatacactgttagatctgatggacctcctttatccaacggtcttctttttgagaggtttaaaattaataaaatatgattaaatag-a 21569346  T
Q  359 tgaaggaaac-aagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaatt 414  Q
    ||| | |||| |||| ||||||||||||||||| ||||| |||| || |||||||||    
T  21569345 tgatgaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaatt 21569289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 46425918 - 46426009
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaata 345  Q
    |||||||||||||||||| |||||| |||| ||||||| |||||  |||||||| | |||||||||||| ||||| |||||||||| ||||||    
T  46425918 aataaattagatgttggttatacaccgttaaatctgatggacctcctttatccaacagtctcctttttt-agggagttaaaattaacgaaata 46426009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 48499565 - 48499463
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    |||||||||||||||||||||| || | |||||||||||||   | ||||| || |||| ||||||  |||||||||||||   |||| |||||||||||    
T  48499565 aaattagatgttggtgatacaccgtaaaatctgatagacctctgtaatccaacgatctctttttttaggggattaaaattatcaaaattggaccaaattg 48499466  T
Q  357 aat 359  Q
    |||    
T  48499465 aat 48499463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 5547115 - 5547044
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctttttt 322  Q
    ||||||||||  | |||||||||| |||  ||||||||||||||| | ||||||||| ||||||||||||||    
T  5547115 taaaataaatctggtgttggtgattcacacttagatctgatagacgtcatttatccaacggtctcctttttt 5547044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 5418153 - 5418247
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| ||||||||||||||    
T  5418153 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaataaaataggaccaaat 5418247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 22623056 - 22623162
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    |||||||||||||||||||||||||   | | |||||||||||||   | ||||| ||||||| |||| |  |||||||||||||   |||| |||||||    
T  22623056 aaataaattagatgttggtgatacattataaaatctgatagacctccgtaatccaacggtctctttttgtaggggattaaaattatcaaaattggaccaa 22623155  T
Q  353 attgaat 359  Q
    |||||||    
T  22623156 attgaat 22623162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 38032333 - 38032439
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||| ||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  38032333 aaataaattaggtgttgatgatacactataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 38032432  T
Q  353 attgaat 359  Q
    |||||||    
T  38032433 attgaat 38032439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 5575427 - 5575528
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  | ||||||||||| | |||||||  | ||||||  |||||||| ||||||||||||||  | |||||||||| | |||||||||| |||    
T  5575427 aataaattaagtattggtgatacatgattagatcacacagacctcctttatccaacggtctccttttttaggagattaaaattgacgaaataggactaaa 5575526  T
Q  354 tt 355  Q
    ||    
T  5575527 tt 5575528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 34095572 - 34095677
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||| ||||||||||  | | |||||||||||||   | || || ||||||||||||||  |||||||||||||   |||| |||||||    
T  34095572 aaataaattaggtgtgggtgatacactataaaatctgatagacctccgtaattcaacggtctccttttttaggggattaaaattatcaaaattggaccaa 34095671  T
Q  353 attgaa 358  Q
    ||||||    
T  34095672 attgaa 34095677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 46425827 - 46425725
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||| |||||||||||||| |||| ||||||| |||||  |||||||| || |||  ||||||  ||  ||||||||||||||| ||||  |||    
T  46425827 aataaattaggtgttggtgatacac-gttaaatctgattgacctcctttatccaacgatctttttttttatggagttaaaattaatgaaacaggattaaa 46425729  T
Q  354 ttga 357  Q
    ||||    
T  46425728 ttga 46425725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 47572778 - 47572684
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaat 354  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| |||| |||||||||    
T  47572778 ttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtcttctttttt-agggatttaaaattaataaaattggaccaaat 47572684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 18091785 - 18091679
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | || || ||||||| |||||| || |||||||||||   |||| |||| ||    
T  18091785 aaataaattaggtgttggtgatacactataaaatctgatagacctctgtaattcaacggtctcattttttaagagattaaaattatcaaaattggactaa 18091686  T
Q  353 attgaat 359  Q
    |||||||    
T  18091685 attgaat 18091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 22622072 - 22621966
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||| | ||| ||||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  22622072 aaataaattcggtgtcggtgatacactataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 22621973  T
Q  353 attgaat 359  Q
    |||||||    
T  22621972 attgaat 22621966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 47243914 - 47244054
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattgaa 358  Q
    |||| |||| ||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| ||||| |||||||| | |    
T  47243914 ttaggtgtttgtggtacacggttagatatgatgaacttcctttatccaacggtcttctttttt-agggatttaaaattaataaaatatgaccaaatcg-a 47244011  T
Q  359 tgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||| | ||||||  | || ||||||||||||| ||||| ||||    
T  47244012 tgacgaaaacaaagataaggaccaaattgaaatgtttaatagt 47244054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 5574405 - 5574304
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  | ||||||||||| | ||||||||   ||||||  |||||||| |||||| |||||||  | |||||||||| | |||||||||| |||    
T  5574405 aataaattaagttttggtgatacatgattagatctctcagacctcctttatccaacggtcttcttttttaggagattaaaattgaggaaataggactaaa 5574306  T
Q  354 tt 355  Q
    ||    
T  5574305 tt 5574304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 54822575 - 54822474
Alignment:
Q  256 taaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaatt 355  Q
    |||||||  ||||||||||||| |||||||||  || |||||  |||||||| | |||| ||||||   ||  ||||||||||| |||||||| ||||||    
T  54822575 taaattatgtgttggtgatacatggttagatccaatggacctcctttatccaacagtcttctttttgttggatttaaaattaataaaataggatcaaatt 54822476  T
Q  356 ga 357  Q
    ||    
T  54822475 ga 54822474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 251 - 396
Target Start/End: Complemental strand, 769 - 624
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||| ||||| ||||||||||||| || ||||||||||||| || | ||||||||| |||||||||||||| |   ||||||||| || ||||||||||    
T  769 taaaacaaatttgatgttggtgatatacagttagatctgatatactttatttatccaacggtctccttttttaacccattaaaattgattaaataggacc 670  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggttta 396  Q
    ||||||||||| |||||||| | ||| ||||||||||||| |||||    
T  669 aaattgaatgatggaaacaatataaaggaccaaattgaaacgttta 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 251 - 390
Target Start/End: Original strand, 1038 - 1177
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||| | |||||||||||||||||||||||||||| || | |||||| || ||||||||||||||      |||||||| |||||||||||||    
T  1038 taaaataaatttggtgttggtgatacacggttagatctgatatacttcatttattcaacggtctccttttttagcacgttaaaattgatgaaataggacc 1137  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaa 390  Q
    ||||||||||| | ||| |||| ||| | |||||||||||    
T  1138 aaattgaatgatgaaaataagataaagggccaaattgaaa 1177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 85000 - 85097
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattga 357  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| ||||| |||||||||||    
T  85000 ttaggtgttggtggtacacggttagatatgatgaacttcttttatccaacggtcttctttttt-agggatttaaaattaataaaatatgaccaaattga 85097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 252 - 401
Target Start/End: Complemental strand, 12364391 - 12364242
Alignment:
Q  252 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacca 351  Q
    |||||||||||  |||||||||||||| |||||||||||||||||| |||||||||  |||| ||||||||  ||| ||||||| ||| |||||||||||    
T  12364391 aaaataaattatgtgttggtgatacacagttagatctgatagacctcatttatccaatggtcccctttttttgggggttaaaataaattaaataggacca 12364292  T
Q  352 aattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||||||| ||  |||| |||| |||||||||| || ||| ||||| ||||    
T  12364291 aattgaaggactgaaagaagataaatgaccaatttaaaacgtttaatagt 12364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 258 - 415
Target Start/End: Complemental strand, 20921706 - 20921548
Alignment:
Q  258 aattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctt--ttttcagggattaaaattaatgaaataggaccaaatt 355  Q
    |||||| ||||||||||| || ||||||| |||||||||| ||||||||| | ||||||||  |||| |||| ||||||| ||| |||||||||||||||    
T  20921706 aattaggtgttggtgatatacagttagatatgatagacctcatttatccaacagtctcctttttttttaggg-ttaaaatgaataaaataggaccaaatt 20921608  T
Q  356 gaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaattt 415  Q
    |||||| ||||| ||||  || |||||| |||||| ||||| || | || ||||||||||    
T  20921607 gaatgatggaaagaagatcaaggaccaatttgaaacgtttaatatttaggggaccaattt 20921548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 252 - 367
Target Start/End: Original strand, 12365933 - 12366046
Alignment:
Q  252 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacca 351  Q
    ||||||||| || |||||||||||||| |||| |||||||||| || ||||||||| |||||||| ||||   ||| ||||||| ||| |||||||||||    
T  12365933 aaaataaatcaggtgttggtgatacacagttatatctgatagatctcatttatccaacggtctccatttt--gggggttaaaatgaataaaataggacca 12366030  T
Q  352 aattgaatgaaggaaa 367  Q
    |||||||||| |||||    
T  12366031 aattgaatgatggaaa 12366046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 40542434 - 40542331
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaa 352  Q
    |||||||||| | ||| |||||||| |||| ||| ||| |||||  |||||| | |||||||||||||| ||||| ||||||||||||||||||||||||    
T  40542434 aataaattaggtattgatgatacaccgttaaatccgatggacctcctttatctaacggtctcctttttt-agggagttaaaattaatgaaataggaccaa 40542336  T
Q  353 attga 357  Q
    |||||    
T  40542335 attga 40542331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 370962 - 370863
Alignment:
Q  258 aattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    |||||| ||||||||||||||  |||||| |||||||||| ||||||||| ||||||  ||||||   || ||||||| ||| |||||||| ||||||||    
T  370962 aattaggtgttggtgatacaccattagatttgatagacctcatttatccaacggtcttattttttagaggtttaaaatcaataaaataggatcaaattga 370863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 10330893 - 10330804
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaatt 355  Q
    |||| ||||||||| ||||||||||||||||||  ||||||||   |||| ||||||   ||| ||||||||||| |||||||||||||||    
T  10330893 tgtttgtgatacactgttagatctgatagacct-ctttatccaatagtcttctttttaaggggtttaaaattaataaaataggaccaaatt 10330804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 38593228 - 38593127
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||  ||||||||||||||  ||||||||||| || ||  |||||||| |||||| ||||||   | | ||||||||||| ||||||||||||||    
T  38593228 ataaattaagtgttggtgatacactattagatctgatggatctc-tttatccaacggtcttctttttgaggagtttaaaattaataaaataggaccaaat 38593130  T
Q  355 tga 357  Q
    |||    
T  38593129 tga 38593127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 38596824 - 38596723
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||  ||||||||||||||  ||||||||||| || ||  |||||||| |||||| ||||||   | | ||||||||||| ||||||||||||||    
T  38596824 ataaattaagtgttggtgatacactattagatctgatggatctc-tttatccaacggtcttctttttgaggagtttaaaattaataaaataggaccaaat 38596726  T
Q  355 tga 357  Q
    |||    
T  38596725 tga 38596723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 16602930 - 16602846
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaatta 337  Q
    ||||||||||| |||||||||||||| || | ||||||||||| |   | ||||| ||||||  |||||| ||||||||||||||    
T  16602930 aaataaattaggtgttggtgatacactgtaaaatctgatagacatccgtaatccaacggtcttttttttttagggattaaaatta 16602846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 20630595 - 20630735
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaaattgaa 358  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||| | ||||||| ||||| ||||||||||| |||| ||||||||| | |    
T  20630595 ttaggtgttggtggtacacggttagatatgatgaacttcctttatccaacggtattctttttt-agggatttaaaattaataaaattggaccaaatcg-a 20630692  T
Q  359 tgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||| | ||||||  | || ||||||||||||| ||||| ||||    
T  20630693 tgacgaaaacaaagataaggaccaaattgaaacgtttaatagt 20630735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 30179476 - 30179570
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| ||||||  ||||||  ||  || |||||||| ||||||||||||||    
T  30179476 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtctttttttttatggatttcaaattaataaaataggaccaaat 30179570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 415
Target Start/End: Original strand, 371889 - 372045
Alignment:
Q  259 attagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaa 358  Q
    ||||| |||| ||||||||| ||||||||||||  ||||  |||||||| | |||  ||||||    || ||||||||||| |||||||| ||||||| |    
T  371889 attaggtgttagtgatacaccgttagatctgatgaacctcctttatccaacagtcatctttttgagaggtttaaaattaataaaataggatcaaattg-a 371987  T
Q  359 tgaaggaaac-aagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaattt 415  Q
    ||| | |||| |||| ||| || |||||||||| ||||| |||| || |||| |||||    
T  371988 tgatgaaaacaaagataaaggatcaaattgaaacgtttaatagttaggggactaattt 372045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 49618633 - 49618472
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| |  |||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||  ||| ||||||| ||| ||||| ||||    
T  49618633 taaaataaatcaagtgttggtgatactcagttagatctgatagacctcatttatccaacggtctcctttttttgggggttaaaatgaataaaatatgacc 49618534  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||||||| ||||| |||| |||  ||||| || ||| ||||| |||| || |||||||    
T  49618533 aaattgaatgatggaaagaagataaaacaccaatttaaaacgtttaatagttaggggaccaa 49618472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 52439199 - 52439360
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||| |||||||| |||||||||||||| |||||||||||||||| | ||||||||| || ||||||||||   ||  ||||||| ||| |||||| |||    
T  52439199 taaagtaaattaggtgttggtgatacacagttagatctgatagacttcatttatccaacgatctcctttttatgggtgttaaaatgaataaaatagaacc 52439298  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||||||| ||||| |||| ||| || ||| |||||| ||||| |||| || |||||||    
T  52439299 aaattgaatgatggaaagaagataaaggatcaatttgaaacgtttaatagttagaggaccaa 52439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 40778574 - 40778453
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctttt-ttcagggattaaaattaatgaaataggac 349  Q
    |||||||||| || ||  |||||||||| ||||||||| |||||||| ||||||||| |||||||||||| || |||| ||||||| ||| |||||||||    
T  40778574 taaaataaatcaggtgccggtgatacacagttagatctaatagacctcatttatccaacggtctccttttcttgaggg-ttaaaataaataaaataggac 40778476  T
Q  350 caaattgaatgaaggaaacaaga 372  Q
    |||||||||||||||||| ||||    
T  40778475 caaattgaatgaaggaaagaaga 40778453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 45042811 - 45042707
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||||  | |  ||||||||||  ||||| ||||    
T  45042811 taaaataaattagatgttgatgatacacggttagatctgatatacctcatttatccaacggtctcctttttaaatgagttaaaattaacaaaatatgacc 45042712  T
Q  351 aaatt 355  Q
    |||||    
T  45042711 aaatt 45042707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 412
Target Start/End: Original strand, 49619732 - 49619894
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaat-gaaataggac 349  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||| ||||||| |  |||||||||||||   || ||||||| |||  ||| |||||    
T  49619732 taaaataaatcaggtgttggtgatacacagttaaatctgatagacctcatttatctaatggtctccttttttttagggttaaaatgaataaaaaaaggac 49619831  T
Q  350 caaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    |||||||||||| ||||| |||| ||| |||||| ||| || ||||| |||| || |||||||    
T  49619832 caaattgaatgatggaaagaagataaaggaccaatttggaacgtttaatagttaggggaccaa 49619894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 251 - 396
Target Start/End: Original strand, 40779557 - 40779702
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| || ||||||||||||||   | ||| |||||||||| | ||||||| ||||||||||||||  ||| ||||||| ||| ||||||||||    
T  40779557 taaaataaatcaggtgttggtgatacacaaattgatatgatagacctcacttatccaacggtctcctttttttgggggttaaaatgaataaaataggacc 40779656  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggttta 396  Q
    || |||||| | | ||| |||| |||||||||| || ||| |||||    
T  40779657 aacttgaataatgaaaataagataaatgaccaatttaaaacgttta 40779702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 40722950 - 40723053
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaa 352  Q
    |||||||||| ||||| |||||||| |||| ||||||| |||||  |||||| | | ||||| |||||| ||||| ||||||||||||||||||||||||    
T  40722950 aataaattaggtgttgatgatacaccgttaaatctgatggacctcctttatctaacagtctcttttttt-agggagttaaaattaatgaaataggaccaa 40723048  T
Q  353 attga 357  Q
    |||||    
T  40723049 attga 40723053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 50484913 - 50485015
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||||| |||||||||||||| || | ||||||||||||||  | |||||  |||||| ||||||  |||||||||||||   |||| |||||||||||    
T  50484913 aaattaggtgttggtgatacactgtaaaatctgatagacctatgtaatccaatggtctctttttttaggggattaaaattatcaaaattggaccaaattg 50485012  T
Q  357 aat 359  Q
    |||    
T  50485013 aat 50485015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 40721983 - 40721881
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaa 352  Q
    |||||||||| ||||| |||||||| |||| |||| || |||||  |||||||| || ||||||||||  ||| | |||||||||| |||||||||||||    
T  40721983 aataaattaggtgttgatgatacaccgttaaatctaatggacctcctttatccaacgatctccttttt--aggaagttaaaattaacgaaataggaccaa 40721886  T
Q  353 attga 357  Q
    |||||    
T  40721885 attga 40721881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 51088735 - 51088634
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  ||||||||||||| | |||||| | | ||||||  |||||||| ||||||||||||||  | |||||||||| | |||||||||| |||    
T  51088735 aataaattaagtgttggtgatacatgattagatatcacagacctcctttatccaacggtctccttttttaggagattaaaattgacgaaataggactaaa 51088636  T
Q  354 tt 355  Q
    ||    
T  51088635 tt 51088634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 5488778 - 5488886
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| ||||||||||||||  | | || ||||||||||   | ||||| ||||||| |||| | ||||||||||||||   |||| |||||    
T  5488778 taaaataaattaggtgttggtgatacactataaaatttgatagacctccgtaatccaacggtctctttttctaagggattaaaattatcaaaattggacc 5488877  T
Q  351 aaattgaat 359  Q
    |||||||||    
T  5488878 aaattgaat 5488886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 401
Target Start/End: Original strand, 21246404 - 21246539
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaagg 364  Q
    |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||| |||||||||||||| | |||| |     
T  21246404 tgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggattttaaattaataaaataggaccaaatcg-atgacga 21246502  T
Q  365 aaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||||||  | ||||||| |||||||| ||||| ||||    
T  21246503 aaacaaagataatgaccgaattgaaacgtttaatagt 21246539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 259 - 401
Target Start/End: Complemental strand, 9822844 - 9822703
Alignment:
Q  259 attagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattga 357  Q
    ||||| |||||| ||||||||||||||| ||||  ||||  |||||||| | |||| ||||||| ||||||| ||||||||| |||||| |||||| | |    
T  9822844 attaggtgttggggatacacggttagatatgatgaacctcctttatccaacagtcttctttttt-agggatttaaaattaataaaatagaaccaaa-tca 9822747  T
Q  358 atgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    |||| | ||||||  | || ||||||||||||| ||||| ||||    
T  9822746 atgacgaaaacaaagataaggaccaaattgaaacgtttaatagt 9822703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 7111388 - 7111494
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||| ||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  7111388 aaataaattaggtgttgatgatacactataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 7111487  T
Q  353 attgaat 359  Q
    |||||||    
T  7111488 attgaat 7111494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 401
Target Start/End: Original strand, 43808445 - 43808585
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaaattgaa 358  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||| | |||||| ||||||| ||||| ||||||||||| ||||| |||||||| | |    
T  43808445 ttaggtgttggtggtacacggttagatatgatgaacttcctttatctaacggtcttctttttt-agggatttaaaattaataaaatatgaccaaatcg-a 43808542  T
Q  359 tgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    ||| | ||||||  | |||||||||||||||| ||||| ||||    
T  43808543 tgacgaaaacaaagataatgaccaaattgaaacgtttaatagt 43808585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 40187800 - 40187703
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    |||| ||||||||||||||| | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| ||||||||||||    
T  40187800 ttaggtgttggtgatacacgataaaatctgatagacctccgtaatccaacggtctctttttttaggggattaaaattataaaaattggaccaaattga 40187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 52761509 - 52761615
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttca-gggattaaaattaatgaaataggacca 351  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||     ||||| |||||| ||||||||| |||||||||||||   |||| ||||||    
T  52761509 aaataaattaggtgttggtgatacactataaaatctgatagacctccgcaatccaacggtct-cttttttcaggggattaaaattatcaaaattggacca 52761607  T
Q  352 aattgaat 359  Q
    ||||||||    
T  52761608 aattgaat 52761615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 52759568 - 52759462
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | || || ||||||| |||||| || |||||||||||   |||| |||| ||    
T  52759568 aaataaattaggtgttggtgatacactataaaatctgatagacctctgtaattcaacggtctcattttttaagagattaaaattatcaaaattggactaa 52759469  T
Q  353 attgaat 359  Q
    |||||||    
T  52759468 attgaat 52759462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 252 - 412
Target Start/End: Original strand, 22794237 - 22794397
Alignment:
Q  252 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacca 351  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||| || |||||||||||  ||| ||||||| ||| |||||||||||    
T  22794237 aaaataaatcagatgttggtgatacacaattagatctgatagacctcatttatccaacgatctcctttttttgggggttaaaatgaataaaataggacca 22794336  T
Q  352 aattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    ||||||| || ||||  |||| ||| || ||| ||| || ||||| |||| || |||||||    
T  22794337 aattgaaggatggaaggaagataaaggaacaatttggaacgtttaatagttaggggaccaa 22794397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 372
Target Start/End: Complemental strand, 32893645 - 32893538
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaagg 364  Q
    |||||||||||||| |||||||||||||||||  | ||||||| |||||||||||| |  ||| ||||||| ||| ||||| ||||||||||||||| ||    
T  32893645 tgttggtgatacacagttagatctgatagaccacacttatccaacggtctccttttcttgggggttaaaatgaataaaataagaccaaattgaatgatgg 32893546  T
Q  365 aaacaaga 372  Q
    ||| ||||    
T  32893545 aaagaaga 32893538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 361
Target Start/End: Complemental strand, 29657192 - 29657081
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctt-ttttcagggattaaaattaatgaaataggac 349  Q
    |||||||| | || |||||||||||||| ||||||||||||||  || ||||||||| ||||||| || ||||  ||| ||||||||||| ||||||||     
T  29657192 taaaataattcaggtgttggtgatacacagttagatctgatagttctcatttatccaacggtctcgttgtttttgggggttaaaattaataaaataggat 29657093  T
Q  350 caaattgaatga 361  Q
    ||||||||||||    
T  29657092 caaattgaatga 29657081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 251 - 401
Target Start/End: Original strand, 4973963 - 4974113
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| |  ||| |||||||||| ||||||||||||||| || || |||||| |||||||||||| |  ||| ||||||| ||| |||| |||||    
T  4973963 taaaataaatcatgtgtcggtgatacacagttagatctgatagatctcatctatccaacggtctccttttcttgggggttaaaatgaataaaattggacc 4974062  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagt 401  Q
    |||||||| || ||||| |||| |||  ||||| || ||| ||||| ||||    
T  4974063 aaattgaacgatggaaagaagataaagaaccaatttaaaacgtttaatagt 4974113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 29409154 - 29409256
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| || ||||||||| |||||||||||||  | |  ||||||||||  ||||| ||||||    
T  29409154 aaataaattaggtgttggttatacactgttagatctgatagatctcatttatccaacggtctcctttttaaatgagttaaaattaacaaaatatgaccaa 29409253  T
Q  353 att 355  Q
    |||    
T  29409254 att 29409256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 358
Target Start/End: Complemental strand, 4973715 - 4973608
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctcctttt-ttcagggattaaaattaatgaaataggac 349  Q
    |||||||||| | ||||||||||||||| ||||||| |||||||||| || |||||| ||||||| |||| || |||| || |||| ||| |||||||||    
T  4973715 taaaataaatcacatgttggtgatacacagttagatatgatagacctcatctatccaacggtctcattttcttgaggg-ttcaaatgaataaaataggac 4973617  T
Q  350 caaattgaa 358  Q
    |||||||||    
T  4973616 caaattgaa 4973608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 19218895 - 19218998
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcag-ggattaaaattaatgaaataggac 349  Q
    ||||||||||||| |||||||||||||| |||| |||| || |||||  |||||||| |||||||| |||||||| ||||||||||| | ||||||||||    
T  19218895 taaaataaattaggtgttggtgatacactgttaaatctcatggacctcttttatccaacggtctcc-tttttcagaggattaaaattgacgaaataggac 19218993  T
Q  350 caaat 354  Q
     ||||    
T  19218994 taaat 19218998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 29658528 - 29658659
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||||||| ||  ||||||| |||||  ||||||||||||||||| |||||||||  |||||||||||||  ||| ||||||| ||| |||||||| |    
T  29658528 taaaataaatcaggcgttggtggtacacaattagatctgatagaccttatttatccaatggtctcctttttt-gggggttaaaatgaataaaataggatc 29658626  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaa 383  Q
    |||| |||||| | ||| |||| ||| ||||||    
T  29658627 aaatagaatgatgaaaagaagataaaggaccaa 29658659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 42520419 - 42520317
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    ||||||||  |||||||||||||| ||||||||||||||||||  |||||||| |||||| ||||||   ||| |||||||| || ||||| ||| ||||    
T  42520419 ataaattatgtgttggtgatacaccgttagatctgatagacctcctttatccaacggtctactttttaatgggtttaaaattgataaaatatgacaaaat 42520320  T
Q  355 tga 357  Q
    |||    
T  42520319 tga 42520317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 24653584 - 24653685
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaa 353  Q
    |||||||||  ||||||||||||| ||||||||||   ||||||  |||||||| ||||||||||||||  | |||||||||| | |||||||||| |||    
T  24653584 aataaattaagtgttggtgatacatggttagatctcccagacctcctttatccaacggtctccttttttaggagattaaaattgacgaaataggactaaa 24653683  T
Q  354 tt 355  Q
    ||    
T  24653684 tt 24653685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 254 - 383
Target Start/End: Original strand, 32894713 - 32894843
Alignment:
Q  254 aataaattagatgttggtgatacacggtt-agatctgatagacctaatttatccagcggtctcctttt-ttcagggattaaaattaatgaaataggacca 351  Q
    ||||||| |||||||||||||||||  || | |||||||||| || ||||||||| |||||| ||||| || |||| ||||| | ||| |||||||||||    
T  32894713 aataaataagatgttggtgatacacactttaaatctgatagatctcatttatccaacggtcttcttttcttgagggtttaaa-tgaataaaataggacca 32894811  T
Q  352 aattgaatgaaggaaacaagaaaaatgaccaa 383  Q
    |||| ||||| || || |||| ||||||||||    
T  32894812 aatttaatgatgggaagaagataaatgaccaa 32894843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 47536771 - 47536870
Alignment:
Q  258 aattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattga 357  Q
    |||||| ||||||||||||||  |||||||||||||||||  |||||||| |||||| ||||||     | ||||||| ||| |||||||||||||||||    
T  47536771 aattaggtgttggtgatacaccattagatctgatagacctcttttatccaacggtcttctttttgagaagtttaaaatcaataaaataggaccaaattga 47536870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 29408439 - 29408378
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttt 321  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||||  ||||| ||||||    
T  29408439 ttaggtgttggtgatacaccgttagatctgatagacctcatttatccaatggtctacttttt 29408378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 36396012 - 36395908
Alignment:
Q  254 aataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcaggga-ttaaaattaatgaaataggaccaa 352  Q
    ||||||||||||||||||||||||| |||| ||||||| || ||  |||||||| | ||||  |||||| || || ||||||||||  ||||||||| ||    
T  36396012 aataaattagatgttggtgatacactgttaaatctgatggatctcctttatccaaccgtctttttttttaagagagttaaaattaacaaaataggactaa 36395913  T
Q  353 attga 357  Q
    |||||    
T  36395912 attga 36395908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 412
Target Start/End: Original strand, 23153552 - 23153705
Alignment:
Q  259 attagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaa 358  Q
    ||||| |||| ||||||||| |||||||||||| |||||  |||||||| | |||| ||||||    || ||||||||||| ||||| ||  |||||| |    
T  23153552 attaggtgttagtgatacaccgttagatctgatggacctcctttatccaacagtcttctttttgagaggtttaaaattaataaaatatgattaaattg-a 23153650  T
Q  359 tgaaggaaac-aagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
    |||   |||| |||| ||||||||||||||||| ||||| |||| || |||||||    
T  23153651 tgataaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaa 23153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 29186869 - 29186763
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | ||||  ||||||| |||||| ||||||||||||||   |||| | |||||    
T  29186869 aaataaattaggtgttggtgatacactataaaatctgatagacctccgtaatcctacggtctcattttttaagggattaaaattatcaaaattgaaccaa 29186770  T
Q  353 attgaat 359  Q
    |||||||    
T  29186769 attgaat 29186763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 40881283 - 40881186
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattga 357  Q
    |||| |||||||| ||||||||||||| ||||  || |  |||||||| |||||| ||||||| ||||||| ||||||||| ||||| |||||||||||    
T  40881283 ttaggtgttggtggtacacggttagatatgatgaacttcttttatccaacggtcttctttttt-agggatttaaaattaataaaatatgaccaaattga 40881186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 43113879 - 43113773
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| || |||||||||||  | | |||||||||||||   | ||||| ||||||| ||||||  |||||||||||||   |||| |||||||    
T  43113879 aaataaattaggtgctggtgatacactataaaatctgatagacctctgtaatccaacggtctctttttttaggggattaaaattatcaaaattggaccaa 43113780  T
Q  353 attgaat 359  Q
    |||||||    
T  43113779 attgaat 43113773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 29344356 - 29344262
Alignment:
Q  260 ttagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaat 354  Q
    |||| |||||||||||||||||||||| ||||  || |  |||||||| |||||| |||||||  ||  || |||||||  ||||||||||||||    
T  29344356 ttaggtgttggtgatacacggttagatatgatgaacttcctttatccaacggtcttcttttttatggatttcaaattaaaaaaataggaccaaat 29344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 40321267 - 40321201
Alignment:
Q  255 ataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttt 321  Q
    ||||||||  |||||||||||||| ||||||||| || |||||  |||||||| |||||| ||||||    
T  40321267 ataaattatgtgttggtgatacactgttagatctaatggacctcctttatccaacggtcttcttttt 40321201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 44748476 - 44748582
Alignment:
Q  253 aaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaa 352  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||   | ||||| | |||||||||| |  |||||||||||||   |||| ||||||     
T  44748476 aaataaattaggtgttggtgatacactataaaatctgatagaccttcgtaatccaacagtctccttttctaggggattaaaattatcaaaattggaccat 44748575  T
Q  353 attgaat 359  Q
    |||||||    
T  44748576 attgaat 44748582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 415
Target Start/End: Complemental strand, 47535842 - 47535697
Alignment:
Q  270 gtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattgaatgaaggaaac- 368  Q
    ||||||||| |||||||||||| || ||  |||||||| | |||  ||||||    || ||||||||||| |||||||||||||||| ||||   ||||     
T  47535842 gtgatacaccgttagatctgatggatctcctttatccaacagtcatctttttgagaggtttaaaattaataaaataggaccaaattg-atgataaaaaca 47535744  T
Q  369 aagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaattt 415  Q
    |||| ||| ||||||||||||| ||||| |||| || |||| |||||    
T  47535743 aagataaaggaccaaattgaaacgtttaatagttaggggactaattt 47535697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 251 - 412
Target Start/End: Complemental strand, 35564 - 35404
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||  ||||||||||||   ||  ||||||| ||| ||||| ||||    
T  35564 taaaataaattaggtgttggtgatacacagttagatctgataaacctcatttatccaatggtctcctttttatgggtgttaaaatgaataaaatatgacc 35465  T
Q  351 aaattgaatgaaggaaacaagaaaaatgaccaaattgaaaggtttagtagtgagtggaccaa 412  Q
     |||||||| | ||||| |||| |||  ||||| || ||| ||||| |||| || |||||||    
T  35464 -aattgaataatggaaagaagataaagaaccaatttaaaacgtttaatagttagaggaccaa 35404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 36626 - 36731
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    |||||| ||||||  || |||||||||| |||||||||||||||||| ||||||||| ||||||  ||||||   |  ||||||||||| |||||  |||    
T  36626 taaaattaattaggcgtgggtgatacacagttagatctgatagacctcatttatccaacggtcttttttttt---gtgttaaaattaataaaataacacc 36722  T
Q  351 aaattgaat 359  Q
    |||||||||    
T  36723 aaattgaat 36731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 1518 - 1628
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||||| ||||||| |||||| || | |||||||||||||   | ||||| ||||||  |||||| ||||||||||||||   |||| |||||||||||    
T  1518 aaattaggtgttggttatacaccgtaaaatctgatagacctctataatccaacggtctgtttttttaagggattaaaattatcaaaattggaccaaattg 1617  T
Q  357 aatgaaggaaa 367  Q
    ||| |||||||    
T  1618 aataaaggaaa 1628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 367
Target Start/End: Complemental strand, 335 - 225
Alignment:
Q  257 aaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||||| |||||||||||| | || | |||||||||||||   | ||||| ||||||| |||||| ||| ||||||||||   ||||  ||||||||||    
T  335 aaattaggtgttggtgatacgctgtaaaatctgatagacctctgtaatccaacggtctctttttttaaggaattaaaattatcaaaatttgaccaaattg 236  T
Q  357 aatgaaggaaa 367  Q
    ||| |||||||    
T  235 aataaaggaaa 225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 204725 - 204601
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggatt-aaaattaatgaaataggaccaaattgaatgaag 363  Q
    ||||||||||||||||| |||| ||||  || |  ||||||||  ||||| ||||||| ||||||| ||||||||| |||||||||||||||| |||| |    
T  204725 tgttggtgatacacggtaagatatgatgaacttcctttatccaatggtctactttttt-agggatttaaaattaataaaataggaccaaattg-atgacg 204628  T
Q  364 gaaacaagaaaaatgaccaaattgaaa 390  Q
     ||||||  | ||||||||||||||||    
T  204627 aaaacaaagataatgaccaaattgaaa 204601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 42921 - 43024
Alignment:
Q  251 taaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacc 350  Q
    ||||||||||||| |||||||||||||| |||| |||| || ||||   |||||||| |||||||| ||||    ||||||||||| | ||||||||||     
T  42921 taaaataaattaggtgttggtgatacactgttaaatctcatggacc---tttatccaacggtctccattttcggaggattaaaattgacgaaataggact 43017  T
Q  351 aaattga 357  Q
    |||||||    
T  43018 aaattga 43024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 35197 - 35302
Alignment:
Q  252 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacca 351  Q
    |||| ||||||| |||||||||||||| || | |||||||||||||   | ||||| ||||||  ||||||  |||||||||||||   |||| ||||||    
T  35197 aaaaaaaattaggtgttggtgatacactgtaaaatctgatagacctccgtaatccaacggtctgtttttttaggggattaaaattataaaaattggacca 35296  T
Q  352 aattga 357  Q
    ||||||    
T  35297 aattga 35302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 79615 - 79510
Alignment:
Q  252 aaaataaattagatgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggacca 351  Q
    |||| ||||||| |||||||||||||| || | |||||||||||||   | ||||| ||||||  ||||||  |||||||||||||   |||| ||||||    
T  79615 aaaaaaaattaggtgttggtgatacactgtaaaatctgatagacctccgtaatccaacggtctgtttttttaggggattaaaattataaaaattggacca 79516  T
Q  352 aattga 357  Q
    ||||||    
T  79515 aattga 79510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 21330 - 21239
Alignment:
Q  265 tgttggtgatacacggttagatctgatagacctaatttatccagcggtctccttttttcagggattaaaattaatgaaataggaccaaattg 356  Q
    ||||| |||||||| |||||||||  |||||||  |||||||  |||||| |||||||   ||||||||||| || |||| |||||||||||    
T  21330 tgttgatgatacaccgttagatctcgtagacctcctttatccgacggtcttcttttttataggattaaaattgattaaattggaccaaattg 21239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 98634 - 98716
Alignment:
Q  290 atagacctaatttatccagcggtctcctt-ttttcagggattaaaattaatgaaataggaccaaattgaatgaaggaaacaaga 372  Q
    |||||||| ||||||| | |||||||||| |||| |||| ||||| | ||| ||||||||||||||||||||| ||||| ||||    
T  98634 atagacctcatttatcgaacggtctccttcttttgaggg-ttaaactgaataaaataggaccaaattgaatgatggaaagaaga 98716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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