View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19577_low_10 (Length: 223)
Name: NF19577_low_10
Description: NF19577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19577_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 45409698 - 45409904
Alignment:
| Q |
1 |
tgacatgacatgtgaaacatgaggatggatgagttttactttgttttctttgcaatagttttgaaccagattagattaatgttattaattgagaccgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45409698 |
tgacatgacatgtgaaacatgaggatggatgagttttactttgttttctttgcaatagttttgaaccatattagattaatgttattaattgagaccgctg |
45409797 |
T |
|
| Q |
101 |
agccgatatcgtaggtttaagcttttaattttggtgcaacattaatatcagtactagttgtaccaattatgaactattaatagtatagcttcaaccgacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45409798 |
agccgatatcgtaggtttaagcttttaattttggtgcaacattaatatgagtactagtagtaccaattatgaactattaatagtatagcttcaaccgacc |
45409897 |
T |
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| Q |
201 |
cccacct |
207 |
Q |
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||||||| |
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| T |
45409898 |
cccacct |
45409904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27357461 - 27357285
Alignment:
| Q |
1 |
tgacatgacatgtgaaacatgaggatggatgagttttactttgttttctttgcaatagttttgaaccagattagattaatgttattaattgagaccgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27357461 |
tgacatgacatgtgaaacatgaggatggatgagttt-actttgttttctttgcaatagttttgaaccagattagattaatgttattaattgataccgctg |
27357363 |
T |
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| Q |
101 |
agccgatatcgtaggtttaagcttttaattttggtgcaacattaatatcagtactagttgtaccaattatgaactatt |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27357362 |
agccgatatcgtaggtttaagcttttaattttggtgcaacattaatatcagtactagtagtaccaattatgaactatt |
27357285 |
T |
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