View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19577_low_2 (Length: 616)
Name: NF19577_low_2
Description: NF19577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19577_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 290 - 598
Target Start/End: Original strand, 1404458 - 1404766
Alignment:
| Q |
290 |
atatatataggtaatttgggttagtatccctttctaacagctgtatgatgtatcagtttcagattgtgatcaaatctcaagttataaatttatatatatt |
389 |
Q |
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| T |
1404458 |
atatatataggtaatttgggttagtatccctttctaacagctgtatgatgtatcagtttcagattgtgatcaaatctcaagttataaatttatatatatt |
1404557 |
T |
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| Q |
390 |
ggtacttatgtcatcaacattctagttattgaatgcactttaccaattgatgcaagtctctagtattgttagaacctaactctgaagcaggcatgtttct |
489 |
Q |
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| T |
1404558 |
ggtacttatgtcatcaacattctagttattgaatgcactttaccaattgatgcaagtctctagtattgttagaacctaactctgaagcaggcatgtttct |
1404657 |
T |
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| Q |
490 |
tgctcagtctaggatatgtcacaggacttgtctaaagtttttagtgaataaaatggtcaataataaccgatgattaggaaatcaatgatcgatattatgt |
589 |
Q |
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| T |
1404658 |
tgctcagtctaggatatgtcacaggacttgtctaaagtttttagtgaataaaatggtcaataataaccgatgattaggaaatcaatgatcgatattatgt |
1404757 |
T |
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| Q |
590 |
cattatacg |
598 |
Q |
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| T |
1404758 |
cattatacg |
1404766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 1404150 - 1404437
Alignment:
| Q |
7 |
tcgaagaatatgagagacttccaacaattatttttccaagttcacctttaatcagtacatggagttctagacaattacagaagcagcctatgtatcaata |
106 |
Q |
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| T |
1404150 |
tcgaagaaagtgagagacttccaacaattatttttccaagttcacctttaatcagtacatggagttctagacaattacagaagcagcctatgtatcaata |
1404249 |
T |
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| Q |
107 |
aggcatcaatttctgcaaataatatatatgaaattcagcaaaataaataccaaaagggacgggaatagtcattggctcgaattatgtattcggattgtct |
206 |
Q |
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| T |
1404250 |
aggcatcaatttctgcaaataatatatatgaaattcagcaaaataaataccaaaagggaagggaatagtcattggctcgaattatgtattcggattgtct |
1404349 |
T |
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| Q |
207 |
ttcctctcccttatagttaactgattattttgtcgatgaggtgtcaactttatggtaagagttcgaccttgtaacctcgagacatata |
294 |
Q |
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| T |
1404350 |
ttcctctcccttatagttaactgattattttgtcgatgaggtgtcaactttgtggtaagagttcgaccttgtaacctcgagacatata |
1404437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 7255991 - 7255872
Alignment:
| Q |
177 |
attggctcgaattatgtattcggattgtctttcctctcccttatagttaactgattattttgtcgatgaggtgtcaacttta----tggtaagagttcga |
272 |
Q |
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| T |
7255991 |
attgggtcgaattatgtattcggattgtctttcctcttccttataattaactgattattttgtcgataaggtttcaactcaatggttggtaaaagtttga |
7255892 |
T |
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| Q |
273 |
ccttgtaacctcgagacata |
292 |
Q |
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| T |
7255891 |
ccttgtaacctcgagacata |
7255872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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