View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19577_low_3 (Length: 505)
Name: NF19577_low_3
Description: NF19577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19577_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 47774237 - 47773737
Alignment:
| Q |
1 |
gctccattattggcttcacacaataaccaagatgaacaagttagtttttcatatatgctatgaatgtaatagaaatgcaaaacaatgagatttaatttat |
100 |
Q |
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| T |
47774237 |
gctccattattggcttcacacaataaccaagatgaataagttaccttttcgtttatgatatgaatgtaatagaaatgcaaaacaatgagatttaatttat |
47774138 |
T |
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| Q |
101 |
tgaagtaaatctagatggaaatcgtctttgacaagattgttgaaaataatttttaaacaaact-tttttggacaaattattatgaaaattcttaatctca |
199 |
Q |
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| T |
47774137 |
tgaagtaaaacta-atggaaatcatctttgacaaggttgttgaaaataattttaaaaagaaatatttttggacaagttattatgaaaaatcttaaact-- |
47774041 |
T |
|
| Q |
200 |
ttagttttaggctaatgctagatggaaatcttaagaaaatacacacacctatagagaattgccttcgctttctcaatcttaagtagatgcaaatcaaaat |
299 |
Q |
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| T |
47774040 |
ttagttttaggctaatgctagatggaaatcttaggaaaatacacacacctttggagaattgctttcgctttctcaatcttaagtagatgcaaatcaaaat |
47773941 |
T |
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| Q |
300 |
gagtacaaaaaccacggcaacaactggcactacgatggcaatgacagttccagttttactttgtcctgcaaaaattaatttaaatcgtcaatgacattca |
399 |
Q |
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| T |
47773940 |
gagcaccaaaaccacggtaacaacgggcactacaacagcaatgactgttccagttttgctttgtcctgcacaaattaatttaaatcgtcagtgacattca |
47773841 |
T |
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| Q |
400 |
atagattaaaactataataaaatttgtgtcacaattaatatcacatttgatcattttgaaacacaacaaataaaataaaatgatggtaattttatcaaat |
499 |
Q |
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| T |
47773840 |
atagattaaaactatgataaaattcgtgtcacaattaatatcacatttgatcattttgaaacacaaaaaataaaataaaatgatggtaattttatcaaat |
47773741 |
T |
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| Q |
500 |
taat |
503 |
Q |
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| T |
47773740 |
taat |
47773737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 47769136 - 47769027
Alignment:
| Q |
266 |
gctttctcaatcttaagtagatgcaaatcaaaatgagtacaaaaaccacggcaacaactggcactacgatggcaatgacagttccagttttactttgtcc |
365 |
Q |
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|||||||||||||||| |||||||||||||||||||| | |||||||| | | ||||||||||| | |||| |||||||||| ||||| | ||||| |
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| T |
47769136 |
gctttctcaatcttaaatagatgcaaatcaaaatgaggaacaaaaccacagtagcaactggcactgcagtggcgatgacagttcgggtttttttgtgtcc |
47769037 |
T |
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| Q |
366 |
tgcaaaaatt |
375 |
Q |
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| T |
47769036 |
tgcacaaatt |
47769027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 375
Target Start/End: Original strand, 27370990 - 27371082
Alignment:
| Q |
283 |
tagatgcaaatcaaaatgagtacaaaaaccacggcaacaactggcactacgatggcaatgacagttccagttttactttgtcctgcaaaaatt |
375 |
Q |
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| T |
27370990 |
tagaagcaaataaaaatgagtaccaaaaccacagtaacaacgggcactgtggtggcgatgacaattcctattttgctgtgtcctgcacaaatt |
27371082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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