View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19578_high_2 (Length: 436)
Name: NF19578_high_2
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19578_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 24691777 - 24692188
Alignment:
| Q |
9 |
aatgagaagcaagaaaaaggaatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24691777 |
aatgagaagcaagaaaaaggaatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtctt |
24691876 |
T |
|
| Q |
109 |
aaggtaaatgaaaatctagtcctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24691877 |
aaggtaaatgaaaatctagtcctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgaga |
24691976 |
T |
|
| Q |
209 |
atttttaatttcagggatatattaaaattttgtcaattgcaggacaaatcccttgccatttcgtgaaatccatattggttttacgaggtgcatggacttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24691977 |
atttttaatttcagggatatattaaaattttgtcaattgcaggacaaatcccttgccatttcgtgaaatccatattggttttacgaggtgcatggacttt |
24692076 |
T |
|
| Q |
309 |
gatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgttcttgcatagg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24692077 |
gatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgttcttgcatagg |
24692176 |
T |
|
| Q |
409 |
taaggggtatat |
420 |
Q |
| |
|
|||||||||||| |
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|
| T |
24692177 |
taaggggtatat |
24692188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 24640576 - 24640975
Alignment:
| Q |
8 |
caatgagaagcaagaaaaaggaatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtct |
107 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
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|
| T |
24640576 |
caatgagaagcaggtgaaaggaatgatttagtactaaatttgtaggtttcagacaaatctattctcttaaattaccgaaattaaaaaatgatattagcct |
24640675 |
T |
|
| Q |
108 |
taaggtaaatgaaaatctagtcctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgag |
207 |
Q |
| |
|
|||||| |||||||| || ||| |||||||||||||||| ||||| ||||||||| |||| |||||||||||||| ||| |
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| T |
24640676 |
taaggt---------------------aattgaaattcctcggcactgtaaggcctttt-ggatcagtcaatctaatcattaatatctaatatggttgag |
24640753 |
T |
|
| Q |
208 |
aatttttaatttcagggatatattaaaattttgtcaattgcaggacaaatc---------ccttgccatttcgtgaaatccatattggttttacgaggtg |
298 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24640754 |
aatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatccatattggttttacgaggtg |
24640853 |
T |
|
| Q |
299 |
catggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgtt |
398 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
24640854 |
caaggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaatgacgctactgtt |
24640953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 24675680 - 24676067
Alignment:
| Q |
9 |
aatgagaagcaagaaaaaggaatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatgaaattagtctt |
108 |
Q |
| |
|
||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |
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|
| T |
24675680 |
aatgagaagcaggtaaaaggaatgatttagtcctaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattcaaaaatgagattagcctt |
24675779 |
T |
|
| Q |
109 |
aaggtaaatgaaaatctagtcctggtaattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgaga |
208 |
Q |
| |
|
||||| ||||||||||||| || | |||||||||||| ||||| |||||||||||||| ||||||||||||| ||||| |
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|
| T |
24675780 |
aaggt---------------------aattgaaaatcattgatgccgtaaggcctttt-ggatctgtcaatctagtcattgatatctaatatgatcgagc |
24675857 |
T |
|
| Q |
209 |
atttttaatttcagggatatattaaaattttgtcaattgcaggacaaatc---------ccttgccatttcgtgaaatccatattggtttt-acgaggtg |
298 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||| | |||||||||||||| |||||||| || ||||||| |||||||||||| |||||||| |
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|
| T |
24675858 |
attttttatttcagggatatgtcgaaattttgttagttgcaggacaaatcttccttatcccttgccaatttgtgaaattcatattggtttttacgaggtg |
24675957 |
T |
|
| Q |
299 |
catggactttgatgacatattagtctaatagcatgggaaatccacacatgttaagtaaaagtgatgtgttttttaattgaacactaacgacgctactgtt |
398 |
Q |
| |
|
||||||||| |||| ||| || |||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||| |
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|
| T |
24675958 |
catggacttcaatgaaataatattctaatagcacggcaagtccacacatgttaagtaaaagggatgtgttttttaattgaacactaatgatactagtgtt |
24676057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 24677803 - 24677908
Alignment:
| Q |
135 |
aattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaa |
234 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| |||||| |||| ||||||| |||||||||||||| |||||||||| |||||||||||||||| ||| |
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|
| T |
24677803 |
aattgaaattcctcgacactataaggcctttt-ggatcgatcaacctagtcaccgatatctaatatgaccgagaattttgaatttcagggatatatcaaa |
24677901 |
T |
|
| Q |
235 |
attttgt |
241 |
Q |
| |
|
||||||| |
|
|
| T |
24677902 |
attttgt |
24677908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 328
Target Start/End: Original strand, 24719233 - 24719436
Alignment:
| Q |
135 |
aattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaa |
234 |
Q |
| |
|
|||||||| || | ||||| ||||||||||||| |||| |||| ||||||| |||||| |||||| |||||||||| |||||||||||||||| ||| |
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|
| T |
24719233 |
aattgaaattccttgacaccgtaaggcctttttttatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaatttcagggatatatcaaa |
24719332 |
T |
|
| Q |
235 |
attttgtcaattgcaggaca---------aatcccttgccatttcgtgaaatccatattgg-ttttacgaggtgcatggactttgatgacatattagtct |
324 |
Q |
| |
|
||||| | | |||||||||| ||||||||||||||| ||||||||| |||||| |||| | |||||||||||||| || | ||||||||| |
|
|
| T |
24719333 |
attttcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattagtct |
24719432 |
T |
|
| Q |
325 |
aata |
328 |
Q |
| |
|
|||| |
|
|
| T |
24719433 |
aata |
24719436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 24686534 - 24686626
Alignment:
| Q |
164 |
ttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaaattttgtcaattgcaggacaaa |
256 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||||||||||| |||| || ||||||||| ||||||||| | |||||||||||| |
|
|
| T |
24686534 |
ttttggatcgatcaatctagtcactgatatctaatatgatcgagaattttcaattccaaggatatattgaaattttgttagttgcaggacaaa |
24686626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 24686410 - 24686498
Alignment:
| Q |
9 |
aatgagaagcaagaaaaaggaatgatctagtactaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattaaaaaatga |
98 |
Q |
| |
|
||||||||||| | ||||||| | || |||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
24686410 |
aatgagaagcaggtaaaagga-taatttagtcctaaatttgtaggtttcagacaaatctaatctcttaaattaccgaaactaaaaaatga |
24686498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 24714057 - 24714151
Alignment:
| Q |
135 |
aattgaaaatcatcgacactgtaaggcctttttggatcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatat |
230 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||||||||| | ||||||||| ||| ||||| |||||| |
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|
| T |
24714057 |
aattgaaaatcatcaacaccataaggcctttt-ggatccaccaatctagtcactgatatctaatatgattgagaattttcaatatcaggtatatat |
24714151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 24713960 - 24714025
Alignment:
| Q |
9 |
aatgagaagcaagaaaaaggaatgatctagtactaaaattgtaggtttcagacaaatctagtctct |
74 |
Q |
| |
|
|||||||||| | ||||| |||||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
24713960 |
aatgagaagctggtaaaagaaatgatttagccctaaaattgcaggtttcagacaaatctagtctct |
24714025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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