View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19578_high_4 (Length: 384)

Name: NF19578_high_4
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19578_high_4
NF19578_high_4
[»] chr8 (1 HSPs)
chr8 (79-384)||(5657163-5657468)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 79 - 384
Target Start/End: Complemental strand, 5657468 - 5657163
Alignment:
Q  79 gccgggaaagacctgccaagaaagcacccaccgaaccaaagaacaccaagtccctccagaagaaaggaatcagaacaaaccgccattgagcggtaggtac 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5657468 gccgggaaagacctgccaagaaagcacccaccgaaccaaagaacaccaagtccctccagaagaaaggaatcagaacaaaccgccattgagcggtaggtac 5657369  T
Q  179 aagtggatcctggccagcacctgagagaatgacatcccgacaccgccacgaccacgaaaccctataagttccattacaatacaagtttccccttcgactc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||     
T  5657368 aagtggatcctggccagcacctgagagaatgacatcccgacaccgccaccactacgaaaccctataagttccattacaatacaagtttccccttcgactt 5657269  T
Q  279 ataaaaagagtagtgcttccagacattttaccaaaggaaccatttttaggaagaaaatttaacccaatctgccgggtcataacaaaggcggattttattg 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5657268 ataaaaagagtagtgcttccagacattttaccaaaggaaccatttttaggaagaaaatttaacccaatctgccgggtcataacaaaggcggattttattg 5657169  T
Q  379 tccagt 384  Q
    ||||||    
T  5657168 tccagt 5657163  T

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