View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19578_high_7 (Length: 255)
Name: NF19578_high_7
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19578_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 24110343 - 24110589
Alignment:
| Q |
10 |
gagagatatgaaaccatttaacaccaaatgtcatacacaaacaaaatcttaatcgtacatgaaccaccaaaccaaacaagccctttttaggccagcannn |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24110343 |
gagagagatgaaaccatttaacaccaaatgtcatacacaaacaaaatcttaatcgtacatgaaccaccaaaccaaacaagccctttttaggccagcattt |
24110442 |
T |
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| Q |
110 |
nnnn-gtccactcccttctttgaacggctattttttactcaccactcattcttgttgccacaaacccttcctttgttcaaagtctcttttatcctcttct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24110443 |
tttttgtccactcccttctttgaacggctattttttactcaccactcattcttgttgccacaaacccttcctttgttcaaagtctcttttatcctcttct |
24110542 |
T |
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| Q |
209 |
ctccacttgaatgatttgtttctttgtttgtacgtatgacatttgcc |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24110543 |
ctccacttgaatgatttgtttctttgtttgtacgtatgacatttgcc |
24110589 |
T |
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