View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19578_low_1 (Length: 516)
Name: NF19578_low_1
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19578_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 2 - 508
Target Start/End: Complemental strand, 40742092 - 40741579
Alignment:
| Q |
2 |
ggatgtcgaagaatattgctctaaaaaaggaatgctgtcaagaaactactagaggataattacagaaaaatgaattgaaaaaataaa-------cacctg |
94 |
Q |
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||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40742092 |
ggatgtcaacgaaaattgctctaaaaaaggaatgctgtcaagaaactactagaggataattacagaaaaatgaattgaaaaaataaaaaataaacacctg |
40741993 |
T |
|
| Q |
95 |
tccaagtgataaagaggttcgtctagaaataaaatacgtggtctcatcacaagctccctagcaatgctaacaagccttctctcaccactaggaagtcctt |
194 |
Q |
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| T |
40741992 |
tccaagtgataaagaggttcgtctagaaataaaatacgtggtctcatcacaagctccctagcaatgctaacaagccttctctcaccactaggaagtcctt |
40741893 |
T |
|
| Q |
195 |
tcatataacaatgtccacctataagtttatttgcatgatcacctaaagacattgcatgtaaagcatcctcaaccacactctttttctgacaaaagaaacc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40741892 |
tcatataacaatgtccacctataagtttatttgcatgatcacctaaagacattgcatgtatagcatcctcaaccacactctttttctgacaaaagaaacc |
40741793 |
T |
|
| Q |
295 |
aggaagttgcagcaaggctgaataatacagaaactcgcgaacagtgagggatccaatcagagtggtttctctatctacataaccctgcaagttaagaaac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40741792 |
aggaagttgcagcaaggctgaataatacagaaactcgcgaacagtgagggatccaatcagagtggtttctctatctacataaccctgcaagttaagaaac |
40741693 |
T |
|
| Q |
395 |
aaatatttatatacatatacttttaaacttacacattcatttttctcatattattatcaataaacaatatgaaagcatggttttgaaagataagcagatt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40741692 |
aaatatttatatacatatacttttaaacttacacattcatttttctcatattattatcaataaacaatatgaaagcatggttttgaaagataagcagatt |
40741593 |
T |
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| Q |
495 |
aagttcaatgagat |
508 |
Q |
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|||||||||||||| |
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| T |
40741592 |
aagttcaatgagat |
40741579 |
T |
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