View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19578_low_3 (Length: 416)
Name: NF19578_low_3
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19578_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 24111167 - 24110852
Alignment:
| Q |
18 |
agtcataatttgaaacaagattaatgttacgaactcacaatcaattagaattaattgtatgaattaagctaacttttcttatacacgtttagggtttaaa |
117 |
Q |
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| T |
24111167 |
agtcataatttgaaacaagattaatgttacgaactcacaatcaattagaattagttgtatgaattaagctaacttttcttataaacatatagggtttaaa |
24111068 |
T |
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| Q |
118 |
ttgtgaatg-gaagtttgagggagtggtcataa-------atgacgaaaaatcacttatgatgttctttaagttatatgtttgtataaaataatcgattc |
209 |
Q |
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| T |
24111067 |
ttgtgaatgagaagtttgagggagtggtcataactcataaatgacaaaaaatcacttatgatgttctttaagttatatgtttgtataaaataatcgattc |
24110968 |
T |
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| Q |
210 |
gttgagnnnnnnngttctacatagttcatcaaaaagtttgcaacattgaacgctttcaacatttgtgttaaaaaagttttatatagtttatgaggtatgc |
309 |
Q |
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| T |
24110967 |
gttgagtttttttgttctacatagttcatcaaaaaatttgcaccattgaacgctttcaacatttgtgttaaaaaagttttatgtagtttatgaggtatgc |
24110868 |
T |
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| Q |
310 |
taacatgtatgcatct |
325 |
Q |
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| T |
24110867 |
taacatgtatgcatct |
24110852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 24110765 - 24110693
Alignment:
| Q |
339 |
tggacactatttctaatacttaaaagacatatctaatttaatctaatacaaacaaagcttaaaagattgcatt |
411 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24110765 |
tggacaccatttctaatacttaaaagacatatctaatttaatctaatacaaacaaagcttaaaagattgcatt |
24110693 |
T |
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