View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19578_low_5 (Length: 369)

Name: NF19578_low_5
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19578_low_5
NF19578_low_5
[»] chr2 (3 HSPs)
chr2 (180-310)||(12644870-12645000)
chr2 (317-353)||(12646648-12646684)
chr2 (12-59)||(12644778-12644825)
[»] chr5 (1 HSPs)
chr5 (188-221)||(18953194-18953227)
[»] chr4 (1 HSPs)
chr4 (180-221)||(39634347-39634388)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 12644870 - 12645000
Alignment:
Q  180 cttgagtagaacaattcttgcacaaactttacttacctcttgacaaaacttcagatcatcagagctccttttccctagaaaccggaggattaacacaaaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||    
T  12644870 cttgagtagaacaattcttgcacaaactttacttacctcttggcaaaacttcagatcatcagggctcctttcccctagagaccgaaggattaacacaaaa 12644969  T
Q  280 tatatacatttctcgtataatagttccaatt 310  Q
    |||||||||||||||||||||||||||||||    
T  12644970 tatatacatttctcgtataatagttccaatt 12645000  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 12646648 - 12646684
Alignment:
Q  317 tataaaactaaatacaccaataaatcatgcaatattt 353  Q
    |||||||||||||||||||||||||||||||||||||    
T  12646648 tataaaactaaatacaccaataaatcatgcaatattt 12646684  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 12644778 - 12644825
Alignment:
Q  12 aatactaatactagttgttgcaaaatttgatgagaagagaagtgaaaa 59  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| ||||    
T  12644778 aatactattactagttgttgcaaaatttgataaaaagagaagtaaaaa 12644825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 18953194 - 18953227
Alignment:
Q  188 gaacaattcttgcacaaactttacttacctcttg 221  Q
    ||||||||||||| ||||||||||||||||||||    
T  18953194 gaacaattcttgcccaaactttacttacctcttg 18953227  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 39634347 - 39634388
Alignment:
Q  180 cttgagtagaacaattcttgcacaaactttacttacctcttg 221  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  39634347 cttgagtagaacaatttttggtcaaactttacttacctcttg 39634388  T

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