View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19578_low_6 (Length: 356)
Name: NF19578_low_6
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19578_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 37896169 - 37896455
Alignment:
| Q |
16 |
tcataaacattaaacttaggtgaacctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctacatctttaaaag |
115 |
Q |
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| T |
37896169 |
tcataaacattaaacttaggtgatcctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctacatctttaaaag |
37896268 |
T |
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| Q |
116 |
gttcatttttcatttcacttattgccctttcaattactttaacaccattcacaaaaccatcttcccccttcataacctttctcttcacagttgcatgaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896269 |
gttcatttttcatttcacttattgccctttcaatttctttaacaccattcacaaaaccatcttcccccttcataacctttctcttcacagttgcatgaca |
37896368 |
T |
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| Q |
216 |
taatgttaaacaatttccaaaatacccctctggtattttgtacccaagtctatctctacaatcacctgcaaaacgaaaatactcttc |
302 |
Q |
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| T |
37896369 |
taatgttaaacaatttccaaaatacccctctggtattttgtacccaagtctatctctacaatcacctgcaaaacgaaaatactcttc |
37896455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 37959033 - 37958750
Alignment:
| Q |
16 |
tcataaacattaaacttaggtgaacctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctacatctttaaaag |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||| | ||||||||||| |
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| T |
37959033 |
tcataaacattaaacttaggcgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaaaag |
37958934 |
T |
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| Q |
116 |
gttcatttttcatttcacttattgccctttcaattactttaacaccattcacaaaaccatcttcccccttcataacctttctcttcacagttgcatgaca |
215 |
Q |
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| T |
37958933 |
gttcatttttcatttcacttattaccctttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatgaca |
37958834 |
T |
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| Q |
216 |
taatgttaaacaatttccaaaatacccctctggtattttgtacccaagtctatctctacaatcacctgcaaaacgaaaatactc |
299 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| |
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| T |
37958833 |
taatgttagacaattcccaaaatacccctctggtattttgtacccaagtctttctctacaatcacctggaaaaccaaaatactc |
37958750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 299
Target Start/End: Complemental strand, 37953201 - 37953006
Alignment:
| Q |
104 |
catctttaaaaggttcatttttcatttcacttattgccctttcaattactttaacaccattcacaaaaccatcttcccccttcataacctttctcttcac |
203 |
Q |
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||||||||| ||||||||||||||| ||| |||||||| | |||||||| |||||| ||||||||||||||||||| || |||| | | ||||||||| |
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| T |
37953201 |
catctttaagaggttcatttttcatctcagttattgccttctcaattaccttaacagcattcacaaaaccatcttctcctttcacatctcttctcttcat |
37953102 |
T |
|
| Q |
204 |
agttgcatgacataatgttaaacaatttccaaaatacccctctggtattttgtacccaagtctatctctacaatcacctgcaaaacgaaaatactc |
299 |
Q |
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||||||||| || | |||||| ||||| ||||||||||| |||||| ||||||| ||||| ||||| |||||||||| |||| ||||||||| |
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| T |
37953101 |
cgttgcatgattaaacgctaaacagtttccgaaatacccctccggtattgtgtaccctagtctgtctctgcaatcacctgtgaaacaaaaatactc |
37953006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 39712171 - 39712219
Alignment:
| Q |
232 |
ccaaaatacccctctggtattttgtacccaagtctatctctacaatcac |
280 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
39712171 |
ccaaaatacccctctggtattgagtacccaagtctatctctgcaatcac |
39712219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 11527783 - 11527841
Alignment:
| Q |
222 |
taaacaatttccaaaatacccctctggtattttgtacccaagtctatctctacaatcac |
280 |
Q |
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|||||| || ||||||||||||||||||||| || |||||||||||||| ||||||| |
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| T |
11527783 |
taaacagttcccaaaatacccctctggtattggataaccaagtctatctctgcaatcac |
11527841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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