View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19578_low_9 (Length: 243)
Name: NF19578_low_9
Description: NF19578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19578_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 5656976 - 5657186
Alignment:
| Q |
18 |
aaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5656976 |
aaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatct |
5657075 |
T |
|
| Q |
118 |
gaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5657076 |
gaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggacaataaa |
5657175 |
T |
|
| Q |
218 |
atccgcctttg |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
5657176 |
atccgcctttg |
5657186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 5718718 - 5718884
Alignment:
| Q |
18 |
aaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatct |
117 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| | |
|
|
| T |
5718718 |
aaaaccgccaaggtaaatttgacatgttctgctaacttttgaggatcaaaagtagcagctaa---aacactttctgctgcaaggcataactatattatat |
5718814 |
T |
|
| Q |
118 |
gaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaa |
187 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5718815 |
gaacttcaattatgaatcactaattactttctttttaagttcttgaaatcatttttaaatgagtttttaa |
5718884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 5686577 - 5686742
Alignment:
| Q |
18 |
aaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactatattatct |
117 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||| | |
|
|
| T |
5686577 |
aaaaccgccaaggtaaatttgacatgttctgctaacttttgaggatcaaaagtagcagctaa---aacactttctgctgcaag-cataactatattatat |
5686672 |
T |
|
| Q |
118 |
gaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaa |
187 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5686673 |
gaacttcaattatgaatcactaattactttctttttaagttcttgaaatcatttttaaatgagtttttaa |
5686742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 17036469 - 17036439
Alignment:
| Q |
155 |
agttcttgaaatcatttttaaatgagttttt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17036469 |
agttcttgaaatcatttttaaatgagttttt |
17036439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University