View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19579_high_1 (Length: 398)
Name: NF19579_high_1
Description: NF19579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19579_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 42680752 - 42681124
Alignment:
| Q |
1 |
atagtgcttccattattgagttatggcaagtactgtgggattaattatagtggttgccctggggagacaccttgtgatgaccttgatacttgttgcatga |
100 |
Q |
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| T |
42680752 |
atagtgcctccattattgagttatggaaagtactgtgggattaattatagtggttgccctggggagacaccttgtgatgaccttgatacttgttgcatga |
42680851 |
T |
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| Q |
101 |
atcatgacctttgtgtggaagccaaaaactgtgagttctcaacttttctctacatcattcattacgcggtaagttatgaaattattattatgaaaataat |
200 |
Q |
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| T |
42680852 |
atcatgacctttgtgtgaaagccaaaaactgtgagttctcaacttttctctacattattcattacgcggtaagttatgaaattattattatgaaaataat |
42680951 |
T |
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| Q |
201 |
tacaaaatagatgatgatgatgatgttaagcagatgactacctaagccaagagtgcagtcaaacattcataaaatgtttgaacaagtttaagaagagtgg |
300 |
Q |
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| T |
42680952 |
tacaaaata------gatgatgatgttaagcagatgactacctaagccaagagtgcagtcaaacattcataaaatgtttgaacaagtttaagaagagtgg |
42681045 |
T |
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| Q |
301 |
aggtcctacgttcgatggaaacacatgtgaagtggattatattattgaactcctcagtgttgtaatggaaggtgctctg |
379 |
Q |
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| T |
42681046 |
aggtcctacgttcgatggaaacacatgtgaagtggattatattattgaactcctcagtgttgtaatggaaggtgctctg |
42681124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 34945538 - 34945432
Alignment:
| Q |
3 |
agtgcttccattattgagttatggcaagtactgtgggattaattatagtggttgccctggggagacaccttgtgatgaccttgatacttgttgcatgaat |
102 |
Q |
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| T |
34945538 |
agtgcctccattgttgagatatggaaagtactgtggacttttgtatagtggatgccctggtgaaaaaccttgtgatggtctagatgcttgttgtatgaag |
34945439 |
T |
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| Q |
103 |
catgacc |
109 |
Q |
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| T |
34945438 |
catgacc |
34945432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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