View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19579_high_2 (Length: 289)
Name: NF19579_high_2
Description: NF19579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19579_high_2 |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 6415 - 6219
Alignment:
| Q |
3 |
caagaatataaatgtttgtgctataaatgaagaaattgaagctccaataacgctttcatcctttcttcccattattccatcatgtaccagccacaactct |
102 |
Q |
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| T |
6415 |
caagaatataaatgtttgtgctataaatgaagaaattgaagctccaataacgctttcatcctttcttcccattattccatcatgtaccatacacaatgct |
6316 |
T |
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| Q |
103 |
tgtgcttgaagttgcgttgtagacctacaacgcacaaaaatagaacagaaacacgagnnnnnnnntaaatgcataattcaatatcggaagaaagaaata |
201 |
Q |
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| T |
6315 |
tgtgcttgaagttgggttgtagacctacaacgcacaaaaatagaacagaaacacgag--aaaaaataaatgcataattcaatatcggaagaaagaaata |
6219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 6199 - 6108
Alignment:
| Q |
197 |
aaatacagtcctatacatgtaccaagagttgtgtttacatagattctatgacaatatcagaagaacaacaatatccaagaattggtgtagaaa |
289 |
Q |
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| T |
6199 |
aaatacagtc-tatacatgtaccaagagttgtgtttacatagattctatggcaatatcagaagaacaacaatatccaagaattggtgtagaaa |
6108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 20968752 - 20968671
Alignment:
| Q |
4 |
aagaatataaatgtttgtgctataaatgaagaaattgaagctccaataacgctttcatcctttcttcccattattccatcat |
85 |
Q |
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| T |
20968752 |
aagaacataattgtttgtgctataaatgaagatattgcagctctagtgactcgatcttcctttcttccaatcattccatcat |
20968671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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