View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19579_high_3 (Length: 226)

Name: NF19579_high_3
Description: NF19579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19579_high_3
NF19579_high_3
[»] chr1 (40 HSPs)
chr1 (82-204)||(36846352-36846473)
chr1 (16-87)||(2430500-2430571)
chr1 (16-89)||(1597337-1597410)
chr1 (16-85)||(3572564-3572633)
chr1 (16-87)||(6978774-6978845)
chr1 (16-86)||(9115841-9115911)
chr1 (16-85)||(2632856-2632925)
chr1 (16-81)||(36361786-36361851)
chr1 (16-85)||(46666712-46666781)
chr1 (16-89)||(52630777-52630850)
chr1 (16-84)||(39930461-39930529)
chr1 (16-87)||(8332018-8332089)
chr1 (16-83)||(25789767-25789834)
chr1 (16-87)||(39329612-39329683)
chr1 (19-85)||(5806290-5806356)
chr1 (16-85)||(6911497-6911566)
chr1 (16-85)||(47037461-47037530)
chr1 (16-85)||(49822916-49822985)
chr1 (16-84)||(20260086-20260154)
chr1 (16-82)||(9831872-9831938)
chr1 (16-85)||(12190176-12190245)
chr1 (16-85)||(38964678-38964747)
chr1 (16-84)||(14788727-14788795)
chr1 (22-85)||(35187466-35187529)
chr1 (16-82)||(32824926-32824992)
chr1 (16-85)||(4683373-4683442)
chr1 (16-85)||(5518503-5518572)
chr1 (16-81)||(51445083-51445148)
chr1 (21-85)||(32202330-32202394)
chr1 (16-85)||(48916021-48916090)
chr1 (22-84)||(1007757-1007819)
chr1 (18-82)||(50190767-50190831)
chr1 (16-91)||(52699459-52699534)
chr1 (16-75)||(37436630-37436689)
chr1 (16-85)||(29091670-29091739)
chr1 (16-78)||(30241013-30241075)
chr1 (16-81)||(31806759-31806824)
chr1 (22-78)||(13653861-13653917)
chr1 (16-77)||(11014448-11014509)
chr1 (17-81)||(52186049-52186113)
[»] chr3 (29 HSPs)
chr3 (16-90)||(40908268-40908342)
chr3 (16-85)||(24574578-24574647)
chr3 (16-85)||(26849025-26849094)
chr3 (16-88)||(11239116-11239188)
chr3 (16-86)||(44952311-44952381)
chr3 (16-84)||(6231501-6231569)
chr3 (19-91)||(8476301-8476373)
chr3 (16-84)||(28124436-28124504)
chr3 (16-87)||(20297796-20297867)
chr3 (23-84)||(9320448-9320509)
chr3 (16-80)||(33217917-33217981)
chr3 (16-84)||(47114857-47114925)
chr3 (16-85)||(20414464-20414533)
chr3 (22-95)||(43715297-43715370)
chr3 (16-88)||(48339753-48339825)
chr3 (16-87)||(31435920-31435991)
chr3 (16-82)||(1099201-1099267)
chr3 (16-87)||(43132154-43132225)
chr3 (16-65)||(31611004-31611053)
chr3 (33-85)||(45826796-45826848)
chr3 (16-76)||(53165733-53165793)
chr3 (18-59)||(9320405-9320446)
chr3 (16-69)||(10822733-10822786)
chr3 (29-86)||(55435390-55435447)
chr3 (16-84)||(12228256-12228324)
chr3 (38-85)||(29512704-29512751)
chr3 (16-63)||(46359955-46360002)
chr3 (38-87)||(6831954-6832003)
chr3 (33-85)||(28770209-28770261)
[»] scaffold0006 (2 HSPs)
scaffold0006 (16-88)||(201928-202000)
scaffold0006 (22-78)||(143622-143678)
[»] chr7 (39 HSPs)
chr7 (16-88)||(33378845-33378917)
chr7 (16-87)||(48314125-48314196)
chr7 (16-92)||(45045629-45045705)
chr7 (16-87)||(11329996-11330067)
chr7 (16-87)||(27248296-27248367)
chr7 (22-88)||(9814214-9814280)
chr7 (16-86)||(48160589-48160659)
chr7 (16-85)||(8419588-8419657)
chr7 (16-85)||(27213854-27213923)
chr7 (16-85)||(39554186-39554255)
chr7 (16-81)||(48341365-48341430)
chr7 (16-84)||(38544197-38544265)
chr7 (16-84)||(40212892-40212960)
chr7 (16-87)||(9946987-9947058)
chr7 (16-83)||(43949248-43949315)
chr7 (16-86)||(35488187-35488257)
chr7 (16-85)||(25924636-25924705)
chr7 (16-85)||(27419223-27419292)
chr7 (16-91)||(16825347-16825422)
chr7 (16-83)||(45265049-45265116)
chr7 (16-80)||(38396370-38396434)
chr7 (16-88)||(41632360-41632432)
chr7 (16-84)||(44566048-44566116)
chr7 (17-89)||(45723211-45723283)
chr7 (16-87)||(28904183-28904254)
chr7 (20-85)||(25098076-25098141)
chr7 (16-83)||(34930466-34930534)
chr7 (16-80)||(45448945-45449009)
chr7 (16-91)||(25045611-25045685)
chr7 (25-82)||(44820266-44820323)
chr7 (22-86)||(41684020-41684084)
chr7 (34-87)||(11000724-11000777)
chr7 (18-85)||(31921747-31921813)
chr7 (16-82)||(6656226-6656292)
chr7 (16-85)||(18824148-18824218)
chr7 (38-84)||(45440933-45440979)
chr7 (16-81)||(6656476-6656540)
chr7 (38-83)||(30685993-30686038)
chr7 (38-82)||(37534105-37534149)
[»] chr8 (29 HSPs)
chr8 (16-90)||(12710648-12710722)
chr8 (16-93)||(37392537-37392614)
chr8 (16-84)||(18726619-18726687)
chr8 (16-88)||(25837914-25837986)
chr8 (16-87)||(35818421-35818492)
chr8 (16-87)||(38364084-38364155)
chr8 (16-90)||(1554348-1554422)
chr8 (16-85)||(32660932-32661001)
chr8 (16-88)||(16313503-16313575)
chr8 (16-78)||(3050012-3050074)
chr8 (16-89)||(10896212-10896285)
chr8 (16-81)||(26601941-26602006)
chr8 (18-86)||(41228712-41228780)
chr8 (16-87)||(38132734-38132805)
chr8 (16-83)||(42755870-42755937)
chr8 (16-85)||(26062147-26062216)
chr8 (16-84)||(18298115-18298183)
chr8 (22-80)||(7931248-7931306)
chr8 (22-84)||(40197076-40197138)
chr8 (31-88)||(5020486-5020543)
chr8 (16-85)||(7317376-7317445)
chr8 (16-83)||(33444627-33444694)
chr8 (16-82)||(21137134-21137200)
chr8 (43-82)||(8635664-8635703)
chr8 (16-87)||(35394393-35394464)
chr8 (22-80)||(29421493-29421551)
chr8 (38-83)||(25899657-25899702)
chr8 (21-85)||(34672342-34672406)
chr8 (29-77)||(41432756-41432804)
[»] chr5 (20 HSPs)
chr5 (16-90)||(4765554-4765628)
chr5 (16-86)||(19065503-19065573)
chr5 (16-85)||(12970529-12970598)
chr5 (16-87)||(22935909-22935980)
chr5 (16-87)||(28602558-28602629)
chr5 (16-85)||(555705-555774)
chr5 (16-85)||(14206820-14206889)
chr5 (16-85)||(18412212-18412281)
chr5 (16-81)||(11855658-11855723)
chr5 (16-85)||(29543014-29543083)
chr5 (16-80)||(6091718-6091782)
chr5 (16-84)||(36703877-36703945)
chr5 (16-85)||(27481360-27481429)
chr5 (22-82)||(32535946-32536006)
chr5 (17-78)||(8406898-8406959)
chr5 (16-63)||(8646412-8646459)
chr5 (16-88)||(42012175-42012247)
chr5 (23-83)||(6930654-6930714)
chr5 (29-82)||(20962606-20962659)
chr5 (33-82)||(26637045-26637094)
[»] chr4 (36 HSPs)
chr4 (16-86)||(45747794-45747864)
chr4 (16-89)||(27555417-27555490)
chr4 (16-85)||(40435907-40435976)
chr4 (16-85)||(48879332-48879401)
chr4 (16-84)||(27762899-27762967)
chr4 (16-88)||(39730289-39730361)
chr4 (16-88)||(41859043-41859115)
chr4 (16-84)||(48518891-48518959)
chr4 (16-85)||(6279920-6279989)
chr4 (16-85)||(23686794-23686863)
chr4 (16-85)||(35999693-35999762)
chr4 (16-88)||(25932448-25932520)
chr4 (16-84)||(34049597-34049665)
chr4 (16-88)||(43723271-43723343)
chr4 (22-86)||(55967998-55968062)
chr4 (16-87)||(18405231-18405302)
chr4 (16-87)||(42773955-42774026)
chr4 (22-87)||(39498838-39498903)
chr4 (22-87)||(39502177-39502242)
chr4 (16-85)||(39835306-39835375)
chr4 (16-89)||(45596275-45596348)
chr4 (16-84)||(13229989-13230057)
chr4 (25-85)||(25916034-25916094)
chr4 (16-80)||(27942750-27942814)
chr4 (16-87)||(936133-936204)
chr4 (16-87)||(18931760-18931831)
chr4 (17-84)||(32953531-32953598)
chr4 (16-83)||(47670369-47670436)
chr4 (16-82)||(41744222-41744288)
chr4 (24-80)||(34237424-34237480)
chr4 (22-85)||(30415915-30415978)
chr4 (16-72)||(8322252-8322308)
chr4 (16-85)||(50672907-50672973)
chr4 (16-79)||(10400810-10400873)
chr4 (38-89)||(26165393-26165444)
chr4 (16-83)||(38414213-38414278)
[»] chr6 (13 HSPs)
chr6 (16-85)||(7053569-7053638)
chr6 (16-85)||(2657703-2657772)
chr6 (16-85)||(8029336-8029405)
chr6 (16-84)||(1317021-1317089)
chr6 (16-87)||(14171016-14171087)
chr6 (16-81)||(18897924-18897989)
chr6 (16-77)||(16968928-16968989)
chr6 (17-85)||(7344082-7344150)
chr6 (16-88)||(6705761-6705833)
chr6 (48-84)||(10246222-10246258)
chr6 (33-85)||(3869525-3869577)
chr6 (33-83)||(10849784-10849834)
chr6 (19-73)||(21008035-21008089)
[»] chr2 (39 HSPs)
chr2 (16-85)||(346344-346413)
chr2 (16-85)||(39995130-39995199)
chr2 (16-88)||(42674657-42674729)
chr2 (16-87)||(21737397-21737468)
chr2 (16-90)||(34356694-34356768)
chr2 (16-85)||(6171794-6171863)
chr2 (16-85)||(11071608-11071677)
chr2 (16-101)||(37533955-37534040)
chr2 (16-84)||(9733846-9733914)
chr2 (16-95)||(4559562-4559641)
chr2 (16-85)||(5770109-5770178)
chr2 (16-85)||(14777497-14777566)
chr2 (16-82)||(2050869-2050935)
chr2 (16-86)||(20426481-20426551)
chr2 (16-82)||(37192525-37192591)
chr2 (16-86)||(41729128-41729198)
chr2 (16-85)||(2521678-2521747)
chr2 (16-88)||(17965986-17966058)
chr2 (16-80)||(28311701-28311765)
chr2 (16-87)||(40950856-40950927)
chr2 (16-83)||(41750532-41750599)
chr2 (16-85)||(45409253-45409322)
chr2 (16-80)||(638596-638660)
chr2 (16-80)||(37233432-37233496)
chr2 (17-79)||(26310273-26310335)
chr2 (16-85)||(27357962-27358031)
chr2 (16-85)||(6571690-6571759)
chr2 (16-80)||(14832813-14832877)
chr2 (16-81)||(13760948-13761013)
chr2 (16-84)||(1988314-1988382)
chr2 (38-90)||(40570045-40570097)
chr2 (16-81)||(18713660-18713725)
chr2 (29-87)||(45694204-45694262)
chr2 (16-69)||(14253525-14253578)
chr2 (35-87)||(7007595-7007647)
chr2 (34-85)||(14403232-14403283)
chr2 (23-82)||(24499450-24499509)
chr2 (38-85)||(25455049-25455096)
chr2 (16-82)||(11763374-11763439)
[»] scaffold0189 (1 HSPs)
scaffold0189 (16-79)||(28957-29020)
[»] scaffold0702 (1 HSPs)
scaffold0702 (16-87)||(3562-3633)
[»] scaffold0662 (1 HSPs)
scaffold0662 (16-87)||(4471-4542)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 36846352 - 36846473
Alignment:
Q  82 ccctaagattataaataagaccatccctcttttccccttactctcacgcacatatattcatcagattttttgagtccattctcttccttcaatttttcac 181  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36846352 ccctaagat-ataaataagaccatccctcttttccccttactctcacgcacatatattcatcagattttttgagtccattcttttccttcaatttttcac 36846450  T
Q  182 cgtgtggcctaaagcactaactc 204  Q
    |||||||||||||||||||||||    
T  36846451 cgtgtggcctaaagcactaactc 36846473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 2430500 - 2430571
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430500 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 2430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 1597410 - 1597337
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1597410 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaaga 1597337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 3572633 - 3572564
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3572633 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 3572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 6978774 - 6978845
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6978774 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 6978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 9115841 - 9115911
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115841 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 9115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 2632856 - 2632925
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2632856 cataggcatatacattcctattattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2632925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 36361786 - 36361851
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36361786 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 36361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 46666712 - 46666781
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46666712 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 46666781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 52630777 - 52630850
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52630777 catagacatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccctaaga 52630850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 39930461 - 39930529
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39930461 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 39930529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 8332018 - 8332089
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8332018 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaa 8332089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 25789767 - 25789834
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25789767 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 25789834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 39329612 - 39329683
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39329612 catagacatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 39329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5806356 - 5806290
Alignment:
Q  19 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5806356 aggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 6911497 - 6911566
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6911497 cataggcatatacattcttatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 6911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 47037461 - 47037530
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47037461 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 47037530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 49822985 - 49822916
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49822985 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 49822916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 20260154 - 20260086
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20260154 cataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 20260086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 9831938 - 9831872
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9831938 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacac 9831872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 12190245 - 12190176
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  12190245 cataggcatgtacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaacacaccct 12190176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 38964747 - 38964678
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38964747 cataagcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacaccccct 38964678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 14788727 - 14788795
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  14788727 catagacatatacattcctattattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 14788795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 35187466 - 35187529
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35187466 catatacatttctatcattttattcccgggaatcaacaattataacttgaaaaaaacacaccct 35187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 32824926 - 32824992
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  32824926 cataggcatatacattcctattattttatttccggaaatcaacaattataacttgaaacaaacacac 32824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 4683442 - 4683373
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||    
T  4683442 cataggcatatacattcctatcattttatttctgggaatcaacaattataaattgaaacaaagacaccct 4683373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 5518572 - 5518503
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  5518572 cataggcatatatatttctatcattttattcctgggaatcaacaaatataacttgaaacaaacacaccct 5518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 51445148 - 51445083
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51445148 cataggtatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 51445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 32202394 - 32202330
Alignment:
Q  21 gcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  32202394 gcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 32202330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 48916090 - 48916021
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||| |||||||||||    
T  48916090 cataggcatatacatttctatcattttattctctggaatcaacaaatataacttgaaataaacacaccct 48916021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 1007757 - 1007819
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  1007757 catatatattcatatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccc 1007819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 50190831 - 50190767
Alignment:
Q  18 taggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||||||||||||||| ||||||||| |||| ||| |||||||||| ||||||||||||||||    
T  50190831 taggcatatacattcctagcattttatttccggaaattaacaattatatcttgaaacaaacacac 50190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 52699534 - 52699459
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagatt 91  Q
    ||||||||| |  |||||||||||||||||||| |||||| || | ||||||||||||||||| ||||||||||||    
T  52699534 cataggcatgtgtattcctatcattttattcccaggaatctacgaatataacttgaaacaaacgcaccctaagatt 52699459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 37436689 - 37436630
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaaca 75  Q
    |||| |||||||||||||||||||||||||| || |||||||||| |||||| |||||||    
T  37436689 catatgcatatacattcctatcattttattctcgtgaatcaacaaatataacatgaaaca 37436630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 29091670 - 29091739
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| |||||| |||  ||||||||||||  | ||||||||||| ||||||||||||||||||||||||    
T  29091670 catagacatatatatttttatcattttattatcaggaatcaacaaatataacttgaaacaaacacaccct 29091739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 30241013 - 30241075
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 78  Q
    |||||||||||| ||| ||||||||||||| ||   ||||||||| |||||||||||||||||    
T  30241013 cataggcatatatatttctatcattttattaccaaaaatcaacaaatataacttgaaacaaac 30241075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 31806824 - 31806759
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||| |||| || ||| |||||||||||||| | |||||| |||| ||||||||||||||||||||    
T  31806824 cataagcatgtatatttctatcattttattctcaggaatctacaaatataacttgaaacaaacaca 31806759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 13653861 - 13653917
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 78  Q
    |||||| ||| |||||||||||||| | ||||||||||| | |||||||||||||||    
T  13653861 catatatatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaac 13653917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 11014509 - 11014448
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 77  Q
    ||||| ||| || ||| |||||||||||||||| |||||| |||  ||||||||||||||||    
T  11014509 catagacatgtatatttctatcattttattcccaggaatctacatatataacttgaaacaaa 11014448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 52186113 - 52186049
Alignment:
Q  17 ataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||| |||||| ||| |||||||||||||    | ||||||||| ||||||||||||||||||||    
T  52186113 atagacatatatatttctatcattttattataagaaatcaacaaatataacttgaaacaaacaca 52186049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 40908268 - 40908342
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40908268 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 40908342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 24574578 - 24574647
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574578 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 26849025 - 26849094
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26849025 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 26849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 11239188 - 11239116
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11239188 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 11239116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 44952311 - 44952381
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44952311 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 44952381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 6231569 - 6231501
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6231569 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccc 6231501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 8476373 - 8476301
Alignment:
Q  19 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagatt 91  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8476373 aggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttagatt 8476301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 28124504 - 28124436
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28124504 cataggcatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccc 28124436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 20297796 - 20297867
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20297796 cataggcatatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 20297867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 9320509 - 9320448
Alignment:
Q  23 atatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320509 atatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9320448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 33217981 - 33217917
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33217981 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacac 33217917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 47114925 - 47114857
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47114925 cataggcatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccc 47114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 20414533 - 20414464
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  20414533 cataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccct 20414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 43715370 - 43715297
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagattataa 95  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43715370 catatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaagagtataa 43715297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 48339825 - 48339753
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  48339825 cataggcatatacatttatatcattttattcccggaaatcaacaattataacttgaaacaaacacatcctaag 48339753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 31435991 - 31435920
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  31435991 cataggcatatacatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacacaccctaa 31435920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 1099201 - 1099267
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1099201 catagggatatacatttctatcattttattcccgggaatcaacaattataacttaaaacaaacacac 1099267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 43132225 - 43132154
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||| |||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  43132225 cataggcatatatattcctattattttattctcgagaatcaacaaatataacttgaaacaaacacaccctaa 43132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 31611053 - 31611004
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattata 65  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  31611053 catagacatatacattccaatcattttattcccgggaatcaacaattata 31611004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 45826796 - 45826848
Alignment:
Q  33 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||| ||||  |||||||||||||||||||||||    
T  45826796 ctatcattttattccctggaatctacaacgataacttgaaacaaacacaccct 45826848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 53165793 - 53165733
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaa 76  Q
    |||| ||||||| |||||||||||||||||   |||||||||||| |||||||||||||||    
T  53165793 cataagcatatatattcctatcattttatttatgggaatcaacaaatataacttgaaacaa 53165733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 9320446 - 9320405
Alignment:
Q  18 taggcatatacattcctatcattttattcccgggaatcaaca 59  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  9320446 taggtatatacattcctatcattttattcccgagaatcaaca 9320405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 10822786 - 10822733
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataactt 69  Q
    ||||| |||||||| | |||||||||||||||||| ||||||||| ||||||||    
T  10822786 catagacatatacacttctatcattttattcccggaaatcaacaaatataactt 10822733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 55435447 - 55435390
Alignment:
Q  29 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||||||| || ||| ||||  ||||||||||||||| ||||||||    
T  55435447 attcctatcattttattcccaggtatctacaaaaataacttgaaacaaatacacccta 55435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 12228324 - 12228256
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||| ||| |||||||||||||| | ||||| ||||| ||||  || ||||||||||||||    
T  12228324 cataggcatatatatttctatcattttattcgcaggaattaacaactatattttaaaacaaacacaccc 12228256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 29512704 - 29512751
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||| | ||| || |||||||||||||||||||||||||||    
T  29512704 attttattcccagaaattaaaaattataacttgaaacaaacacaccct 29512751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 46359955 - 46360002
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaatta 63  Q
    |||||| |||||||||||||||||||||||||  | ||||||||||||    
T  46359955 cataggtatatacattcctatcattttattccaagaaatcaacaatta 46360002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 6832003 - 6831954
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||| || |||||| |||| ||||| ||||||||||||||||||||    
T  6832003 attttatttccaggaatctacaaatataagttgaaacaaacacaccctaa 6831954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 28770261 - 28770209
Alignment:
Q  33 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| |||||||||| |||||| || | |||||||||||| |||||||||||    
T  28770261 ctatctttttattcccaggaatctacgaatataacttgaaagaaacacaccct 28770209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 201928 - 202000
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  201928 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 143622 - 143678
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 78  Q
    |||||| ||| |||||||||||||| | ||||||||||| | |||||||||||||||    
T  143622 catatatatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaac 143678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 33378845 - 33378917
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33378845 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 33378917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 48314125 - 48314196
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48314125 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 48314196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 45045629 - 45045705
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagatta 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  45045629 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttaaaacaaacacaccctatgatta 45045705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 11329996 - 11330067
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11329996 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 11330067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 27248296 - 27248367
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27248296 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 27248367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 9814280 - 9814214
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9814280 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 9814214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 48160659 - 48160589
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160659 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 48160589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 8419657 - 8419588
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8419657 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27213923 - 27213854
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27213923 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 27213854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 39554186 - 39554255
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39554186 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39554255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 48341365 - 48341430
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48341365 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 48341430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 38544197 - 38544265
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38544197 cataggcatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 38544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 40212892 - 40212960
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40212892 cataggcatatacattcctatcattttattcccgcgaatcaacaattataacttgaaacaaacacaccc 40212960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 9947058 - 9946987
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  9947058 cataggcatatacattcctatcattttattcccgggaatcaaaaattataactttaaacaaacacaccctaa 9946987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 43949248 - 43949315
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43949248 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 43949315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 35488257 - 35488187
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35488257 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacacccta 35488187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 25924705 - 25924636
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25924705 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacataccct 25924636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27419292 - 27419223
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27419292 cataggcatatacatttctatcattttattcccgggaatcagcaattataacttgaaacaaacacaccct 27419223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 16825422 - 16825347
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagatt 91  Q
    |||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  16825422 cataggcatatacatttctatcattttattcctaggaattaacaattataacttgaaacaaacacaccctaagatt 16825347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 45265116 - 45265049
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45265116 cataggcatatacattccaatcattttattcccgagaatcaacaattataacttgaaacaaacacacc 45265049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 38396434 - 38396370
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38396434 catagacatatacattcctatcattttattcccgggaatcaacaattataacttggaacaaacac 38396370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 41632432 - 41632360
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  41632432 cataggcatatacatttctatcattttattctcaggaatcaacaattataacttgaaacaaacacaccttaag 41632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 44566048 - 44566116
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  44566048 catagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacacaccc 44566116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 45723211 - 45723283
Alignment:
Q  17 ataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||    
T  45723211 ataggcatatatattcctatcattttattctcgggaatcaacaaatataacttgaaacaaacacaccgtaaga 45723283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 28904254 - 28904183
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  28904254 catagacatatacatttctatcattttattctcgggaatcaacaattataacttaaaacaaacacaccctaa 28904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 25098076 - 25098141
Alignment:
Q  20 ggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  25098076 ggcatatacattcctatcattttattcccgaaaatcaaaaattataacttgaaacaaacacaccct 25098141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34930534 - 34930466
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataac-ttgaaacaaacacacc 83  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  34930534 cataggcatatacatttctatcattttattcccaggaatcaacaattataactttgaaacaaacacacc 34930466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 45448945 - 45449009
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  45448945 catagacatctacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaacac 45449009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 25045685 - 25045611
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagatt 91  Q
    |||| ||||||| ||||||||| |||||| ||| | ||||||||| ||||||||||||||||||||||||||||||    
T  25045685 catatgcatatatattcctatctttttatccccag-aatcaacaaatataacttgaaacaaacacaccctaagatt 25045611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 44820266 - 44820323
Alignment:
Q  25 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  44820266 atacatttctatcattttattcctgaaaatcaacaattataacttgaaacaaacacac 44820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 41684084 - 41684020
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||| ||| ||||||| |||||| | ||||||||||| |||||||||||||||||||||||||    
T  41684084 catatatatttctatcatattattctcaggaatcaacaaatataacttgaaacaaacacacccta 41684020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 11000724 - 11000777
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||| || ||||||||||  ||||||||||||||||||||||||||    
T  11000724 tatcattttatttccaggaatcaacatatataacttgaaacaaacacaccctaa 11000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31921813 - 31921747
Alignment:
Q  18 taggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||| ||| ||||||||||||| |||  ||| ||||| ||||||||||||||||||||||||    
T  31921813 taggcatatatatttctatcattttatttccga-aatgaacaaatataacttgaaacaaacacaccct 31921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 6656292 - 6656226
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||| ||||| |||| |||||||||||| ||   ||||||||| |||||||||||||||||||||    
T  6656292 cataggtatatatattcatatcattttatttccaaaaatcaacaaatataacttgaaacaaacacac 6656226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 18824148 - 18824218
Alignment:
Q  16 cataggcatatacattc-ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| |||  ||||||||||||||||   ||||||||| || |||||||||||||||||||||    
T  18824148 cataggcatatatattttctatcattttattcccaaaaatcaacaaatacaacttgaaacaaacacaccct 18824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 45440933 - 45440979
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||    
T  45440933 attttattcccaagaatctacaattataacttgaaacaaacacaccc 45440979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 6656540 - 6656476
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||||||||||| |||| |||||||| ||| ||   ||||||||| ||||||||||||||||||||    
T  6656540 cataggcatatatattcatatcattt-atttccaaaaatcaacaaatataacttgaaacaaacaca 6656476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 30686038 - 30685993
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    ||||||||||   ||||| |||||||||||||||||||||||||||    
T  30686038 attttattccaacgaatctacaattataacttgaaacaaacacacc 30685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 37534149 - 37534105
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||||| || |||||| ||||||||||| ||||||||||||||    
T  37534149 attttatttccaggaatctacaattataacatgaaacaaacacac 37534105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 12710648 - 12710722
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 90  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12710648 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 12710722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 37392614 - 37392537
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagattat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37392614 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaatacaccctaacattat 37392537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 18726687 - 18726619
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18726687 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 18726619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 25837914 - 25837986
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25837914 cataggcatgtacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 25837986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 35818492 - 35818421
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35818492 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 35818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 38364084 - 38364155
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38364084 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 38364155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 1554422 - 1554348
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 90  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1554422 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctgagat 1554348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 32661001 - 32660932
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32661001 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 32660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 16313575 - 16313503
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16313575 cataggtatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaag 16313503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3050012 - 3050074
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3050012 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 3050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 10896285 - 10896212
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  10896285 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacacccaaaga 10896212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 26602006 - 26601941
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26602006 cataggcatatacattcctatcattttattcccgggaatcaacaattataatttgaaacaaacaca 26601941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41228780 - 41228712
Alignment:
Q  18 taggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41228780 taggcatatacattcctaccattttattcccgggaattaacaattataacttgaaacaaacacacccta 41228712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 38132805 - 38132734
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38132805 catagacatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 38132734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 42755870 - 42755937
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42755870 cataggcatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacacacc 42755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 26062147 - 26062216
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26062147 cataggaatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 26062216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 18298115 - 18298183
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  18298115 cataggtatatacattcctatcattttattcccgagaatcaaaaattataacttgaaacaaacaaaccc 18298183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 7931248 - 7931306
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  7931248 catatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacac 7931306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 40197138 - 40197076
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  40197138 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacataccc 40197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 5020543 - 5020486
Alignment:
Q  31 tcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||| |||||    
T  5020543 tcctatcattttattcccatgaatcaacaaatataacttgaaacaaacacactctaag 5020486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 7317376 - 7317445
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| |||||||||||||||||   |  ||||||||| ||||||||||||||||||||||||    
T  7317376 cataggcatatatattcctatcattttatttttgaaaatcaacaaatataacttgaaacaaacacaccct 7317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 33444694 - 33444627
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    ||||| |||||| |||  ||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  33444694 catagacatatatatttttatcattttattctcaggaatcaacaaatataacttgaaacaaacacacc 33444627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 21137200 - 21137134
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||||||||| ||| |||| ||||||||| | ||||||||||| |||||||| ||||||||||||    
T  21137200 cataggcatatatatttctattattttattctcaggaatcaacaaatataacttcaaacaaacacac 21137134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 8635664 - 8635703
Alignment:
Q  43 attcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  8635664 attcctgggaatcaacaattataacttgaaacaaacacac 8635703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 35394393 - 35394464
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||| |||||| ||| || ||||||||||| || ||||||| || |||||||||||||||||| |||||||    
T  35394393 catagacatatatatttctttcattttattctcgtgaatcaataaatataacttgaaacaaacaaaccctaa 35394464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 29421551 - 29421493
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    |||||| ||| |||||||||||||| |  |||||||||| ||||| |||||||||||||    
T  29421551 catatatatttctatcattttattctcatgaatcaacaaatataatttgaaacaaacac 29421493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 25899657 - 25899702
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    ||||||||||| |||||| |||| ||||| ||||||||||||||||    
T  25899657 attttattcccaggaatctacaaatataatttgaaacaaacacacc 25899702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 34672342 - 34672406
Alignment:
Q  21 gcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||| |||  ||||||||||||  | ||||||||||| || ||||| |||||||||||||||    
T  34672342 gcatatatatttttatcattttattttcaggaatcaacaaatacaacttcaaacaaacacaccct 34672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 41432756 - 41432804
Alignment:
Q  29 attcctatcattttattcccgggaatcaacaattataacttgaaacaaa 77  Q
    |||||||||||||||||||| |||||| || | |||||||| |||||||    
T  41432756 attcctatcattttattcccaggaatccacgaatataacttaaaacaaa 41432804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 4765628 - 4765554
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4765628 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttagat 4765554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 19065573 - 19065503
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19065573 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 19065503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 12970598 - 12970529
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12970598 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 12970529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 22935980 - 22935909
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22935980 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 22935909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 28602558 - 28602629
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28602558 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 28602629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 555774 - 555705
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  555774 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 14206889 - 14206820
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14206889 cataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 14206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 18412212 - 18412281
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  18412212 cataggcatatacattcctatcattttattcccaggaatcaataattataacttgaaacaaacacaccct 18412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 11855723 - 11855658
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  11855723 cataggcatatacattcctatcattttattctcaggaatcaacaattataacttgaaacaaacaca 11855658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 29543083 - 29543014
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29543083 catagacatatacattccaatcattttattcccaggaatcaacaattataacttgaaacaaacacaccct 29543014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6091718 - 6091782
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6091718 cataggcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacac 6091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 36703877 - 36703945
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||| |||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  36703877 catagacatatacatttctatcattttattcccgataatcaacaattataacttgaaacaaacacaccc 36703945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 27481360 - 27481429
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||||||||||||||| ||   |||||| |||||||||||||||||||||||||||    
T  27481360 cataggcatatacattcctatcattttatttccaaaaatcaaaaattataacttgaaacaaacacaccct 27481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 32535946 - 32536006
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32535946 catatacatttctatcattttattcctgggaatcaacaattataacttaaaacaaacacac 32536006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 8406898 - 8406959
Alignment:
Q  17 ataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaac 78  Q
    |||||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  8406898 ataggcatgtacattcctatcattttattctcgaaaatcaacaattataacttgaaacaaac 8406959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 8646459 - 8646412
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaatta 63  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8646459 catagacatatacattcctatcattttattcccgggaatcaacaatta 8646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42012247 - 42012175
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||| |||||  ||| ||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||    
T  42012247 catagacatatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaacaaacacaccctaag 42012175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 6930654 - 6930714
Alignment:
Q  23 atatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    ||||| ||| |||||||||||||| | ||||||||||| |||||||||||| |||||||||    
T  6930654 atatatatttctatcattttattctcaggaatcaacaaatataacttgaaataaacacacc 6930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 20962606 - 20962659
Alignment:
Q  29 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||||||||||||||||||  ||||| || | |||||||||||||||||||||    
T  20962606 attcctatcattttattcccaagaatctacgaatataacttgaaacaaacacac 20962659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 26637094 - 26637045
Alignment:
Q  33 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||||||||||||||   ||||||||| |||||||||||||||||||||    
T  26637094 ctatcattttattcccattaatcaacaaatataacttgaaacaaacacac 26637045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 45747864 - 45747794
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45747864 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 45747794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 27555417 - 27555490
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27555417 catagacatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaaga 27555490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 40435907 - 40435976
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40435907 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 40435976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 48879332 - 48879401
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48879332 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 48879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 27762967 - 27762899
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27762967 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 27762899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 39730361 - 39730289
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39730361 catagacatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaag 39730289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 41859115 - 41859043
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41859115 cataggcatatacattccaatcattttattcccggaaatcaacaattataacttgaaacaaacacaccctaag 41859043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 48518959 - 48518891
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48518959 cataggcatatacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccc 48518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 6279989 - 6279920
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6279989 catagacatatacattcatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 6279920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 23686794 - 23686863
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23686794 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 23686863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 35999693 - 35999762
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35999693 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccct 35999762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 25932448 - 25932520
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  25932448 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacaccctaag 25932520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 34049665 - 34049597
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34049665 catagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccc 34049597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 43723271 - 43723343
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  43723271 cataggcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctaag 43723343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 55968062 - 55967998
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55968062 catatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 55967998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 18405302 - 18405231
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18405302 cataggcatatacatttctataattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 18405231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42773955 - 42774026
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  42773955 cataggcatatacattccaatcattttattcccagaaatcaacaattataacttgaaacaaacacaccctaa 42774026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 39498838 - 39498903
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39498838 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39498903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 39502177 - 39502242
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39502177 catatacatttctatcattttatttccgggaatcaacaattataacttgaaacaaacacaccctaa 39502242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 39835375 - 39835306
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39835375 catatgcatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 45596275 - 45596348
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  45596275 cataggcatatacatttctatcattttattcccgaaaatcaacaattataacttgaaacaaacgcaccctaaga 45596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 13230057 - 13229989
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  13230057 cataggcatatacatttctatcattttattcccgggaataaaaaattataacttgaaacaaacacaccc 13229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 25916094 - 25916034
Alignment:
Q  25 atacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25916094 atacattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccct 25916034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 27942750 - 27942814
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27942750 catagacatatacattcctatcattttatttccgggaatcaacaattataacttgaaacaaacac 27942814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 936133 - 936204
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  936133 catagggatatatattccaatcattttattctcgggaatcaacaattataacttgaaacaaacacaccctaa 936204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 18931760 - 18931831
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  18931760 catagacatatacattcctatcattttattcccagaaatcaacaattataacttgaaacaaacacactctaa 18931831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 32953531 - 32953598
Alignment:
Q  17 ataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  32953531 ataggcatatacattcctatcattttgttcctgggaatcaacaattataacttgagacaaacacaccc 32953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 47670369 - 47670436
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  47670369 cataggcatatacatttctatcattttatttccaggaatcaacaattataacttgaaacaaacacacc 47670436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 41744288 - 41744222
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  41744288 cataggcatatacatttctatcattttattcccggaaatcaacaattataacttgaaataaacacac 41744222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 34237480 - 34237424
Alignment:
Q  24 tatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34237480 tatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacac 34237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 30415915 - 30415978
Alignment:
Q  22 catatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  30415915 catatatattcctatcattttattatcgggaatcaacaaatataacttgaaacaaacacaccct 30415978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 8322252 - 8322308
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaa 72  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  8322252 catagacatatacatttctatcattttattcccaggaatcaacaattataacttgaa 8322308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 50672973 - 50672907
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  50672973 catagacatatacattcctatcattttattccc-ggaatcaacaat--taacttaaaacaaacacaccct 50672907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 10400873 - 10400810
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaaca 79  Q
    ||||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||||||||    
T  10400873 catagacatatacatttctatcattttattcccaaaaatcaacaaatataacttgaaacaaaca 10400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 26165393 - 26165444
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacaccctaaga 89  Q
    ||||||||| | |||||| |||| |||||| |||||||||||||||||||||    
T  26165393 attttattctcaggaatctacaaatataacatgaaacaaacacaccctaaga 26165444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 38414213 - 38414278
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    ||||| ||| || ||| |||||||||||||||||  ||||||||| |||||||| | |||||||||||    
T  38414213 catagacatgtatatttctatcattttattcccg--aatcaacaaatataactttagacaaacacacc 38414278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 7053638 - 7053569
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7053638 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 7053569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 2657703 - 2657772
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657703 cataggtatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 2657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 8029336 - 8029405
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029336 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 8029405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 1317021 - 1317089
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1317021 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 1317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 14171016 - 14171087
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14171016 cataggcatatagattcctatcattttattcccgggaatcaaaaattataacttgaaacaaacacaccctaa 14171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 18897924 - 18897989
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  18897924 cataggcatatacatttctatcactttatttccgggaatcaacaattataacttgaaacaaacaca 18897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 16968928 - 16968989
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaa 77  Q
    ||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  16968928 catagacatatagattcctatcattttattctcaggaatcaacaattataacttgaaacaaa 16968989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 7344150 - 7344082
Alignment:
Q  17 ataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||||||||||||||| ||| |||  |||||||||| ||||||| ||||||||||    
T  7344150 ataggcatatacattcctatcattttattctcggaaatttacaattataatttgaaacgaacacaccct 7344082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 6705833 - 6705761
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||| |||||| ||| ||| |||||||||||   |||||||||| |||||||||||||||||||||||||||    
T  6705833 catagacatatatatttctaccattttattccaatgaatcaacaaatataacttgaaacaaacacaccctaag 6705761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 10246258 - 10246222
Alignment:
Q  48 cgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||||||||||||||||||||||||    
T  10246258 cgggaatcaacaattataacttgaaacaaacacaccc 10246222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 3869525 - 3869577
Alignment:
Q  33 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||| | |||| ||||  |||||||||||||||||||||||    
T  3869525 ctatcattttattcccagaaatctacaaaaataacttgaaacaaacacaccct 3869577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 10849834 - 10849784
Alignment:
Q  33 ctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||| |||||| | ||  |||||||||||||||||||||    
T  10849834 ctatcattttattcccaggaatctataaaaataacttgaaacaaacacacc 10849784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 21008089 - 21008035
Alignment:
Q  19 aggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaa 73  Q
    ||||||||| |||  ||||||||||||||| | ||||||||| ||||||||||||    
T  21008089 aggcatatatatttttatcattttattcccagaaatcaacaaatataacttgaaa 21008035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 346413 - 346344
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  346413 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 39995199 - 39995130
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39995199 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 39995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42674729 - 42674657
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42674729 cataggcatatacattccaatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 42674657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 21737468 - 21737397
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21737468 catagacatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 21737397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 34356768 - 34356694
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 90  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34356768 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 34356694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 6171794 - 6171863
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6171794 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccct 6171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 11071608 - 11071677
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11071608 cataggcatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacaccct 11071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 37533955 - 37534040
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagattataaataaga 101  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  37533955 catagacatatacattcctatcattttattcccggaaatcaacaattataacttgaaacaaacacacccttagtttacaaataaga 37534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 9733914 - 9733846
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9733914 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 9733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 4559562 - 4559641
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaagattataa 95  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4559562 cataggcatatacattccaatcattttattcttgggaatcaacaattataacttgaaacaaacacaccctaagactataa 4559641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 5770178 - 5770109
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  5770178 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacataccct 5770109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 14777566 - 14777497
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14777566 cataggcatatacattccaatcattttattcccgggaatcaacaattataaattgaaacaaacacaccct 14777497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 2050869 - 2050935
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2050869 cataggtatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacac 2050935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 20426551 - 20426481
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  20426551 cataggcatataaattcctatcattttattcccgggaatcaacaaatataatttgaaacaaacacacccta 20426481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 37192525 - 37192591
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37192525 catagacatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 37192591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 41729198 - 41729128
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccta 86  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  41729198 cataggcatatccattcctatcattttattcccgggaataaaaaattataacttgaaacaaacacacccta 41729128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 2521678 - 2521747
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  2521678 cataggcatatacattccaatcattttattttcgggaatcaacaattataacttgaaacaaacacaccct 2521747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 17965986 - 17966058
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaag 88  Q
    ||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  17965986 catagacatatacattccaatcattttattatcgggaatcaacaattataacttgaaacaaacacaccctaag 17966058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 28311765 - 28311701
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28311765 cataggcatatatattcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 28311701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 40950927 - 40950856
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40950927 cataagcatatatatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctaa 40950856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 41750532 - 41750599
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacc 83  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41750532 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacacc 41750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 45409253 - 45409322
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||    
T  45409253 cataggcatatacattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacacaccct 45409322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 638596 - 638660
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  638596 catagacatatacattcctatcattttatttccggaaatcaacaattataacttgaaacaaacac 638660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 37233432 - 37233496
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37233432 cataggcatatatgttcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 37233496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 26310273 - 26310335
Alignment:
Q  17 ataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaaca 79  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  26310273 atagacatatacatttctatcattttattcccgggaatcaacaattataactttaaacaaaca 26310335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27358031 - 27357962
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||| ||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  27358031 catagacatatacatccctatcattttatacctgggaatcaacaaatataacttgaaacaaacacaccct 27357962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 6571690 - 6571759
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||| |||||||| ||||||| |||||||    
T  6571690 cataggcatatatattcctatcattttatttccggaaatcaacaaatataactttaaacaaatacaccct 6571759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 14832813 - 14832877
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacac 80  Q
    |||||||||||| ||| |||||||||||||||  ||||||||||| |||||||||||||||||||    
T  14832813 cataggcatatatatttctatcattttattcctaggaatcaacaaatataacttgaaacaaacac 14832877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 13760948 - 13761013
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||||| | ||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  13760948 cataggtacatatattcctatcattttattcccgaaaatcaataattataacttgaaacaaacaca 13761013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 1988314 - 1988382
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccc 84  Q
    ||||||||| || ||| |||||||||||||||| | ||||||||| |||||||| ||||||||||||||    
T  1988314 cataggcatgtatatttctatcattttattcccagaaatcaacaaatataacttcaaacaaacacaccc 1988382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 40570045 - 40570097
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacaccctaagat 90  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  40570045 attttattcccaggaatctacaattataacttgaaacaaacacacccttagat 40570097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 18713725 - 18713660
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacaca 81  Q
    |||||||||||| |||  |||||||||||| ||  |||||||||| ||||||||||||||||||||    
T  18713725 cataggcatatatatttatatcattttattaccatgaatcaacaaatataacttgaaacaaacaca 18713660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 45694204 - 45694262
Alignment:
Q  29 attcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||||||||||| | |||| || | ||||||||||||||||| ||||||||    
T  45694204 attcctatcattttattcccagaaatctacgaatataacttgaaacaaacgcaccctaa 45694262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 14253525 - 14253578
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataactt 69  Q
    ||||| |||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  14253525 catagacatatatatttctatcattttattcccgagaatcaacaaatataactt 14253578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 7007595 - 7007647
Alignment:
Q  35 atcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||| |||  |||||||||| |||||||||||| |||||||||||||    
T  7007595 atcattttatccccaagaatcaacaaatataacttgaaataaacacaccctaa 7007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 14403283 - 14403232
Alignment:
Q  34 tatcattttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    |||||||||||| || ||||||||||| || ||||| |||||||||||||||    
T  14403283 tatcattttatttccaggaatcaacaaatacaacttcaaacaaacacaccct 14403232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 24499450 - 24499509
Alignment:
Q  23 atatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||| ||| ||||||||||||| |   |||||||||| |||||||||||||||||||||    
T  24499450 atatatatttctatcattttatttctatgaatcaacaaatataacttgaaacaaacacac 24499509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 25455049 - 25455096
Alignment:
Q  38 attttattcccgggaatcaacaattataacttgaaacaaacacaccct 85  Q
    ||||||||| | |||||| |||| ||||||||||||||||||||||||    
T  25455049 attttattctcaggaatctacaaatataacttgaaacaaacacaccct 25455096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 11763439 - 11763374
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 82  Q
    ||||| |||||| ||||||||||||| |||||||  || |||||| |||||||||||| ||||||||    
T  11763439 catagacatatatattcctatcatttcattcccgaaaaacaacaaatataacttgaaa-aaacacac 11763374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 29020 - 28957
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaaca 79  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29020 cataggcatatacattcctatcattttattcccgaaaatcaacaattataacttgaaacaaaca 28957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 3633 - 3562
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||| |||  ||| ||||||||||  | |||| |||| ||||||||||||||||||||||||||    
T  3633 cataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacaccctaa 3562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 4471 - 4542
Alignment:
Q  16 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctaa 87  Q
    |||||||||||| |||  ||| ||||||||||  | |||| |||| ||||||||||||||||||||||||||    
T  4471 cataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacaccctaa 4542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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