View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_high_13 (Length: 412)
Name: NF1957_high_13
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 37782976 - 37783359
Alignment:
| Q |
23 |
aactcaatcaatcaaaccacttcaagttttttatttgagataggtagattcaaatatgaacaaaaatttgagaaatatatattggacaatgcattttcta |
122 |
Q |
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| T |
37782976 |
aactcaatcaatcaaaccaattcaagttttttatttgagataggtagattcaaatatgaacaaaaatttgagaaatatatattggacaatgctttttcta |
37783075 |
T |
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| Q |
123 |
attatttacaacatagagacnnnnnnnn-tctactttagactgggacacaagtaaatttagtggaatttacaagaattttactcccttcatatatat--- |
218 |
Q |
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| T |
37783076 |
attttttacaacatagagacaaaaaaaaatctactttagactgggacacacgtaaatttagtggaatttacaagaattttactcccttcatatatatcat |
37783175 |
T |
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| Q |
219 |
--atgtgttaaattaaaggttcgaatgtagttgttaaatgcaagtgaatgttactgcagggaattgtagcctctggattagtgattgttgttatttcttg |
316 |
Q |
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| T |
37783176 |
atatgtgttatattaaaggttcgaatgtagttgttaaatgcaagtgaatgttattgcagggaattgtagcctctggattagtgattgttgttatttcttg |
37783275 |
T |
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| Q |
317 |
gtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctcttacttgttgctatctctgcctatatatt |
400 |
Q |
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| T |
37783276 |
gtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctcttacttgttgctatctctgcctatatatt |
37783359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 395
Target Start/End: Original strand, 37808448 - 37808598
Alignment:
| Q |
245 |
agttgttaaatgcaagtgaatgttactgcagggaattgtagcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatattt |
344 |
Q |
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| T |
37808448 |
agttgttaaatgtatgtgaatgttaatgcagggtattgtggtctctgggtcagtggttattgttatttcttggtgtataaggatgaggggtcctctattt |
37808547 |
T |
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| Q |
345 |
acatctgctttcaatcctcttcagctcttacttgttgctatctctgcctat |
395 |
Q |
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| T |
37808548 |
gtgtctgttttcaatcctcttcagcttttacttgtagctgtctttgcctat |
37808598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 37803798 - 37803885
Alignment:
| Q |
304 |
ttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctcttacttgttgctatctctgc |
391 |
Q |
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| T |
37803798 |
ttgttattgcttggtgcataaagatgagaggccctctctttgcctctgttttctatcctcttcaacttttacttgtggctgtctctgc |
37803885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 37792398 - 37792503
Alignment:
| Q |
274 |
agggaattgtagcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctcttcagctctt |
373 |
Q |
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|||||||||||||||||||| || | | |||||||| | |||||||||||||||||||| ||| | ||| | |||| |||| |||||||||| ||| | |
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| T |
37792398 |
agggaattgtagcctctggaataactactattgttattgcctggtgcataaagatgagaggccctctttttgcctctgttttctatcctcttcaactcct |
37792497 |
T |
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| Q |
374 |
acttgt |
379 |
Q |
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|||||| |
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| T |
37792498 |
acttgt |
37792503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 1214066 - 1213982
Alignment:
| Q |
280 |
ttgtagcctctggattagtgattgttgttatttcttggtgcataaagatgagaggtcctatatttacatctgctttcaatcctct |
364 |
Q |
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| T |
1214066 |
ttgttgcctctggattagtggttattgtgacttcgtggtgcataaagatgaggggacctttatttgcatctgtcttcaaccctct |
1213982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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