View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_high_26 (Length: 267)
Name: NF1957_high_26
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_high_26 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 26367771 - 26368013
Alignment:
| Q |
26 |
attatactgttttcaatatattgttgtagtcgaaaatgaatt-atatatatgccaagcatgcactgtattttaccaaggcatgagttagtcacaacattt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26367771 |
attatactgttttcaatatattgttgtagtcgaaaatgaatttatatatatgccaagcatgcactgtattttaccaaggcatgagttagtcacaacattt |
26367870 |
T |
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| Q |
125 |
aagatggtatcagagcatataaatatataattctcatatttcagataattcaatggtacactcacactgcaccacctccagctggaccaattgttttgaa |
224 |
Q |
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| T |
26367871 |
aagatggtatgagagcatataaatatataattctcatatttcagataaatcaatggtacactcacactgcaccacctccagctggaccaattgttttgaa |
26367970 |
T |
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| Q |
225 |
tattgacattccagtcatagcaatgccattagctgcccctctt |
267 |
Q |
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| T |
26367971 |
tattgacattccagtcatagcaatgccattagctgcccctctt |
26368013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 2609633 - 2609549
Alignment:
| Q |
183 |
cactcacactgcaccacctccagctggaccaattgttttgaatattgacattccagtcatagcaatgccattagctgcccctctt |
267 |
Q |
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| T |
2609633 |
cactcacactgcaccacctccagctggaccaattgttttgaatattgacattccagtcatagcaatgccgttagctgcccctctt |
2609549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 39163145 - 39163062
Alignment:
| Q |
184 |
actcacactgcaccacctccagctggaccaattgttttgaatattgacattccagtcatagcaatgccattagctgcccctctt |
267 |
Q |
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||||||| |||||| |||||||| ||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||| |
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| T |
39163145 |
actcacaatgcaccgcctccagcaggacctattgttttgaatgctgacatagtagtcattgcaatgccattagctgcccctctt |
39163062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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