View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_high_3 (Length: 662)
Name: NF1957_high_3
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 21584632 - 21585184
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21584632 |
cataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcc |
21584731 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
21584732 |
tcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacga |
21584831 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaaattgagaaacagagaaaat |
316 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21584832 |
agaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaatttgagaaacagagaaaat |
21584931 |
T |
|
| Q |
317 |
tgggaaattt-gggaattagggttttgaattggatttgagtgggaaacagagaagggggtgttggagtatttattggagggaattgagcttttgtgtttt |
415 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21584932 |
tgggaaatttggggaattagggttttgaattggatttgagtgggaaacagagaagggggtgttggagtatttattggagggaattgagtttttgtgtttt |
21585031 |
T |
|
| Q |
416 |
gatattggtcgttggatttgaagtaatcgacggtttaaattggcgatccgtgcgtattgtgataatgaatgatggacgttgataagttaaatctgacggt |
515 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21585032 |
gatatgggtcgttggattttacgtaatcgacggtttaaattggcgatccgtgcgtattgtgataaggaatgatggacgttgataagttaaatctgacggt |
21585131 |
T |
|
| Q |
516 |
ctaaaatcactttgttgtacctgtgcggataatcatttactttgtgatacttc |
568 |
Q |
| |
|
|| | |||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
21585132 |
ctggattcactttgttgtgcctgtgcggataaccatttactttgtgatacttc |
21585184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 24497294 - 24497583
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| || ||||||||||| ||||| |||||||| |||||||| |||||||| ||||| | ||||| |
|
|
| T |
24497294 |
catagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacc |
24497393 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
24497394 |
tctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacga |
24497493 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaaattgagaaa |
306 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
24497494 |
agaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgacattttcaagagaaaatttgagaaa |
24497583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 24923495 - 24923775
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||| ||||||||||| || ||||| ||||||||||| || ||||||||||| || || ||||||||||| |||||||||||||| ||||| | ||||| |
|
|
| T |
24923495 |
catagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacc |
24923594 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
24923595 |
tctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacga |
24923694 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaa |
297 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24923695 |
agaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacattttcaagagaaaa |
24923775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 25085185 - 25084896
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| | ||||| |
|
|
| T |
25085185 |
catagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacc |
25085086 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
25085085 |
tctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacga |
25084986 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaaattgagaaa |
306 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
25084985 |
agaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacattttcgcgagaaaatttgagaaa |
25084896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 24982193 - 24981920
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||| || ||||||||||| ||||| |||||||| || |||||||||||||| ||||| | ||||| |
|
|
| T |
24982193 |
catagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacc |
24982094 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
24982093 |
tctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacga |
24981994 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaa |
290 |
Q |
| |
|
||||| || | ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
24981993 |
agaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacattttcaa |
24981920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 31825592 - 31825953
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||| ||||||||||| || || || ||||||||||| || ||||||||||| || ||||||||||| || |||||||||||||| ||||| | ||||| |
|
|
| T |
31825592 |
catagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacc |
31825691 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |
|
|
| T |
31825692 |
tctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcgg |
31825791 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagaga--aaaatt-gagaaacagagaa |
313 |
Q |
| |
|
||||| |||| || || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
31825792 |
agaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattggagaaacgaagaa |
31825891 |
T |
|
| Q |
314 |
-aattgggaaatttggg-aattagggttttgaattggatttgagtgggaaacagagaagggg |
373 |
Q |
| |
|
| ||| |||||||||| ||||||||||| | ||| || |||||||||| |||||||||| |
|
|
| T |
31825892 |
gatttgagaaatttgggaaattagggtttggttttgaatcggagtgggaaagagagaagggg |
31825953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 25 - 306
Target Start/End: Original strand, 24919929 - 24920210
Alignment:
| Q |
25 |
acatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacctcttgttt |
124 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || ||||||||||| || || ||||||||||| |||||||| ||||| ||||| | |||||||| |||| |
|
|
| T |
24919929 |
acatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggttt |
24920028 |
T |
|
| Q |
125 |
cctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacgaagaacctt |
224 |
Q |
| |
|
| |||||||||||||| ||||||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
24920029 |
cttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaacttt |
24920128 |
T |
|
| Q |
225 |
tcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaaattgagaaa |
306 |
Q |
| |
|
| ||| |||||||||||||||||||| | ||||||||||||||||||||| || ||||||||| ||||||| |||||||| |
|
|
| T |
24920129 |
cctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatttgagaaa |
24920210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 24923938 - 24924018
Alignment:
| Q |
423 |
gtcgttggatttgaagtaatcgacggtttaaattggcgatccgtgcgtattgtgataatgaatgatggacgttgataagtt |
503 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||| ||||||||||||||||| || || |||| || |||| |||||||| |
|
|
| T |
24923938 |
gtcgttggattttaagttatcgacggtttatattagcgatccgtgcgtattgagaaaaagaatagtgaacgtcgataagtt |
24924018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 502
Target Start/End: Original strand, 31826013 - 31826111
Alignment:
| Q |
405 |
ttttgtgttttgatattggtcgttggatttgaagtaatcgacggtttaaattggcgatccgtgcgtattg-tgataatgaatgatggacgttgataagt |
502 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||| |||||| ||| | ||||||||||||||||| || | |||||||| |||||||||||| |
|
|
| T |
31826013 |
ttttgtgttttgatctcagtcgttggatttgatgtaatagacggtgtaagattgcgatccgtgcgtattgcggaaagcgaatgatgaacgttgataagt |
31826111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 10575532 - 10575264
Alignment:
| Q |
19 |
taaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | || |||||||||||||| ||||| | ||||||| |
|
|
| T |
10575532 |
taaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctc |
10575433 |
T |
|
| Q |
119 |
ttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacgaag |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| || |
|
|
| T |
10575432 |
ttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggag |
10575333 |
T |
|
| Q |
219 |
aacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacatttt |
287 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
10575332 |
aaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttt |
10575264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 354551 - 354316
Alignment:
| Q |
18 |
ataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacct |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||| |||| |||||| |||||||||||| | || ||| |
|
|
| T |
354551 |
ataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct |
354452 |
T |
|
| Q |
118 |
cttgtttcctcataga-tcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
||| |||||||||||| | ||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| || || || || ||||| | | | |
|
|
| T |
354451 |
cttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaa |
354352 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcct |
252 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
354351 |
agaaccttgctatgtcactttgcacctccctttcct |
354316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 39954880 - 39955150
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaa-atcttaagaacac |
115 |
Q |
| |
|
|||| ||||||||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
39954880 |
catacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctc-aagaaagatcttgagaacac |
39954978 |
T |
|
| Q |
116 |
ctcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacg |
215 |
Q |
| |
|
| | || || || ||||| | ||| ||||||||||| |||||||| | || || | ||||||||||| |||||||| || || ||||||||||| || |
|
|
| T |
39954979 |
cgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcg |
39955078 |
T |
|
| Q |
216 |
aagaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacatttt |
287 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| | |||||| ||||| |||||||||||||||||||| |
|
|
| T |
39955079 |
aagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt |
39955150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 10580928 - 10580701
Alignment:
| Q |
18 |
ataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacct |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||| ||||| ||||| |||||||||||| | | ||| |
|
|
| T |
10580928 |
ataaacaacatccatagcagtcagagtcttcctc-----atgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcct |
10580834 |
T |
|
| Q |
118 |
cttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacgaa |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| ||||||||||||||| || || || || ||||| | | || |
|
|
| T |
10580833 |
cttatttcctcatagatcaaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaa |
10580734 |
T |
|
| Q |
218 |
gaacctttcgatgtctctttgcacctccctttc |
250 |
Q |
| |
|
||||||| | || || ||||||||||||||||| |
|
|
| T |
10580733 |
gaaccttgcaatatcactttgcacctccctttc |
10580701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 14261067 - 14261340
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||| | ||||| |
|
|
| T |
14261067 |
cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacacc |
14261166 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
| ||||| ||||| ||||| || ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
14261167 |
gcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacga |
14261266 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaa |
290 |
Q |
| |
|
|| || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14261267 |
agcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacattttcaa |
14261340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 22898700 - 22898433
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| || || ||||||||||| || || ||||| | ||||||||||||||| || ||||| | || || |
|
|
| T |
22898700 |
cataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgcc |
22898601 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
| ||| |||||||| |||||||||||||| | ||| || || ||||| | || | ||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
22898600 |
acgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacga |
22898501 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacat |
284 |
Q |
| |
|
|| ||||| ||||||| |||||| || |||||||| | ||||| || || |||||||| || ||||| |
|
|
| T |
22898500 |
agcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat |
22898433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 22950368 - 22950101
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| || || ||||||||||| || || ||||| | ||||||||||||||| || ||||| | || || |
|
|
| T |
22950368 |
cataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgcc |
22950269 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
| ||| |||||||| |||||||||||||| | ||| || || ||||| | || | ||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
22950268 |
acgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacga |
22950169 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacat |
284 |
Q |
| |
|
|| ||||| ||||||| |||||| || |||||||| | ||||| || || |||||||| || ||||| |
|
|
| T |
22950168 |
agcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat |
22950101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 53328859 - 53328612
Alignment:
| Q |
19 |
taaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaa-atcttaagaacacct |
117 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | | |||||||| ||||| || || |||||||||||||||||||| |||||| ||||| ||||| || |
|
|
| T |
53328859 |
taaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctc-aagaaagatcttgagaacgcca |
53328761 |
T |
|
| Q |
118 |
cttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacgaa |
217 |
Q |
| |
|
| ||||| |||||||| || |||||||| | ||| |||||||| | ||| || | ||||||||||| ||||| ||||| ||||||||||| || || | |
|
|
| T |
53328760 |
cgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgca |
53328661 |
T |
|
| Q |
218 |
gaacctttcgatgtctctttgcacctccctttcctagtcccttacctcc |
266 |
Q |
| |
|
||||||| || |||| || || || |||||||||| ||||| ||||| |
|
|
| T |
53328660 |
gaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctcc |
53328612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 41027719 - 41027452
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacc |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||| | || || |
|
|
| T |
41027719 |
cataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacacgcc |
41027620 |
T |
|
| Q |
117 |
tcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacga |
216 |
Q |
| |
|
| ||| || || ||||||||||| || || | ||| || || ||||| | || || ||||||||||| ||||| || || || || ||||| |||||| |
|
|
| T |
41027619 |
acgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacga |
41027520 |
T |
|
| Q |
217 |
agaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacat |
284 |
Q |
| |
|
|| ||||| || |||| ||||| ||||||||||| | |||||| || || |||||||| || ||||| |
|
|
| T |
41027519 |
agcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat |
41027452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 26358583 - 26358851
Alignment:
| Q |
17 |
cataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaa-atcttaagaacac |
115 |
Q |
| |
|
|||||||||||||||||||||| || || || | | ||||| |||||||| || || ||||||||||| |||||||| |||||| ||||| ||||||| |
|
|
| T |
26358583 |
cataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaataacattctc-aagaaatatcttgagaacac |
26358681 |
T |
|
| Q |
116 |
ctcttgtttcctcatagatcaaaccactgattctcttaacaccacctcttctcgctaatcgacgaatcgctggcttggtgataccctggatgttgtcacg |
215 |
Q |
| |
|
| | ||||| |||||||||| ||||||||| | || |||||||| | || || | ||||||||||| || ||||| || ||||| ||||| || || |
|
|
| T |
26358682 |
cacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcg |
26358781 |
T |
|
| Q |
216 |
aagaacctttcgatgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacatt |
285 |
Q |
| |
|
|||||| || ||||| | ||||||||| |||||||||| ||||| ||||| ||||| | ||||||||| |
|
|
| T |
26358782 |
aagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcctcttcctgacatt |
26358851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University