View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1957_high_4 (Length: 612)

Name: NF1957_high_4
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1957_high_4
NF1957_high_4
[»] chr8 (10 HSPs)
chr8 (223-601)||(4141942-4142320)
chr8 (227-598)||(4129594-4129963)
chr8 (239-577)||(4119570-4119912)
chr8 (262-588)||(4159120-4159446)
chr8 (226-577)||(4149967-4150322)
chr8 (14-130)||(4141756-4141872)
chr8 (11-123)||(9779781-9779894)
chr8 (155-199)||(4141897-4141941)
chr8 (74-129)||(7503887-7503942)
chr8 (168-212)||(9779927-9779971)
[»] chr7 (2 HSPs)
chr7 (23-126)||(5031193-5031297)
chr7 (18-127)||(26554366-26554476)
[»] chr4 (3 HSPs)
chr4 (18-129)||(3516841-3516953)
chr4 (57-129)||(29236550-29236622)
chr4 (155-212)||(11167120-11167177)
[»] chr6 (5 HSPs)
chr6 (11-129)||(9860125-9860244)
chr6 (23-129)||(6120084-6120191)
chr6 (57-129)||(26304314-26304386)
chr6 (57-130)||(30351220-30351293)
chr6 (166-210)||(22607389-22607433)
[»] chr1 (3 HSPs)
chr1 (11-127)||(41151223-41151340)
chr1 (155-212)||(38703384-38703441)
chr1 (155-212)||(27232417-27232473)
[»] chr2 (10 HSPs)
chr2 (12-80)||(19546580-19546648)
chr2 (11-127)||(15954324-15954441)
chr2 (26-127)||(32188360-32188462)
chr2 (39-127)||(11112927-11113015)
chr2 (434-489)||(2716566-2716621)
chr2 (434-489)||(2723189-2723244)
chr2 (434-489)||(2745020-2745075)
chr2 (177-212)||(40453257-40453292)
chr2 (17-118)||(32973526-32973628)
chr2 (155-212)||(2461419-2461476)
[»] chr3 (2 HSPs)
chr3 (11-129)||(19116686-19116804)
chr3 (11-77)||(26618587-26618654)
[»] scaffold0426 (1 HSPs)
scaffold0426 (11-121)||(2579-2689)
[»] chr5 (2 HSPs)
chr5 (74-129)||(8760018-8760073)
chr5 (11-125)||(30860589-30860702)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 223 - 601
Target Start/End: Original strand, 4141942 - 4142320
Alignment:
Q  223 ccctcttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgt 322  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141942 ccctgttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgt 4142041  T
Q  323 tgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacgg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142042 tgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacgg 4142141  T
Q  423 ttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctc 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4142142 ttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcaccttaacatgctactctcaaaagatgcatcccaaacctc 4142241  T
Q  523 tggatctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaactt 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142242 tggatctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaactt 4142320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 227 - 598
Target Start/End: Original strand, 4129594 - 4129963
Alignment:
Q  227 cttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgag 326  Q
    |||||||||||||||||| ||| || ||||||||||||||||||  ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  4129594 cttaacaatggtagtattcatctcaagcatattatttacctgccaatgacatcactcaaagttacattgttgtttgagttagatcgatgactttgttgag 4129693  T
Q  327 aagattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttga 426  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||    
T  4129694 aagattctgtacttcgagaattttggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatctcacttatgagcatcaaaacaacagttga 4129793  T
Q  427 tatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctctgga 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||| ||    
T  4129794 tatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgctttcaaaggatgcatcccatacctctcga 4129893  T
Q  527 tctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaa 598  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  4129894 tctattagggatatagtattttcttctaaccatagcttccatgcctagaaa--gaaacaaaacaaagataaa 4129963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 239 - 577
Target Start/End: Original strand, 4119570 - 4119912
Alignment:
Q  239 agtattgatcccatg-catattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgagaagattctgta 337  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||| |||| || | ||||||||||||||||    
T  4119570 agtattgatcccattacatattatttacctgcctgtgacatcactcaaagttacattgttgtttgagttagattgatgcctcttttgagaagattctgta 4119669  T
Q  338 cttcga---gaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttgatatacttg 434  Q
     | |     |||||||||||||||||||||||||||||||| ||||||||||||||  | |||||| |||| ||||||||||||||||||||||||||||    
T  4119670 gtactctttgaattttgcttgtgaacaaatgcaactttacctggaggtggaagatgccttatctcatttatgagcatcaaaactacggttgatatacttg 4119769  T
Q  435 gtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctctggatctattag 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||    
T  4119770 gtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcaccttaacatgctgctctcaaaacatgcatcccatacctctggatctattag 4119869  T
Q  535 agatataatgttttcttctaaccatagcttccatgcctagtaa 577  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  4119870 agatataatgttttcttctaaccatagcttccatgccttgtaa 4119912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 262 - 588
Target Start/End: Original strand, 4159120 - 4159446
Alignment:
Q  262 ttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgagaagattctgtacttcgagaattttgcttgtgaaca 361  Q
    ||||||||||  ||| || ||||  |||||| ||||||||||||||||| | ||||||| |||||||||||||  |||    ||||||| |||||| |||    
T  4159120 ttacctgccttggacttcactcagagttacactgttgtttgagttagattgttgacttttttgagaagattctccactcttggaatttttcttgtggaca 4159219  T
Q  362 aatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttgatatacttggtctttcttttggaagttcttgcacac 461  Q
    ||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||    
T  4159220 aatgcaacttttcctggaggaggaagatgtgtaatctcacttatgagcatcaaaacaactgttgatatatttggtctgtctcttggaagttcttgcacac 4159319  T
Q  462 aaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacctctggatctattagagatataatgttttcttctaaccatag 561  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4159320 agagaagtcctatgtgtatgcacctcaacatgctgctctcaaaagatgcatcccaaacctctcgatctattagagatataatgttttcttctaaccatag 4159419  T
Q  562 cttccatgcctagtaattgaaacaaaa 588  Q
    ||||||||||||||||  |||||||||    
T  4159420 cttccatgcctagtaaaagaaacaaaa 4159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 226 - 577
Target Start/End: Original strand, 4149967 - 4150322
Alignment:
Q  226 tcttaacaatggtagtattgatcccatgcatatta-tttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttg 324  Q
    ||||||||||  ||||||||||||||||||| ||| |||||||||||   || || || |  |||||||||||||||||||||||| ||||||||| |||    
T  4149967 tcttaacaattatagtattgatcccatgcatgttagtttacctgccttgaacttcactgagagttacattgttgtttgagttagattgatgacttttttg 4150066  T
Q  325 agaagattctgtacttcga---gaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacg 421  Q
    ||||||||||||| | |     ||| ||||||||||||||||||||||| | || ||||| ||||||||||| || ||||||| |||||||||||| ||     
T  4150067 agaagattctgtagtactctttgaactttgcttgtgaacaaatgcaactctccccggaggaggaagatgtgtaatttcacttacaagcatcaaaacaaca 4150166  T
Q  422 gttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaacatgctactctcaaaagatgcatcccaaacct 521  Q
    ||||||||| ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||| ||||    
T  4150167 gttgatatatttggtctgtctcttggaagttcttgtacacaaagaagtccgatgtgtatgcaccttaacatgctgctctcaaaacatgcatcccatacct 4150266  T
Q  522 ctggatctattagagatataatgttttcttctaaccatagcttccatgcctagtaa 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4150267 ctggatctattagagatataatgttttcttctaaccatagcttccatgcctggtaa 4150322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 4141756 - 4141872
Alignment:
Q  14 agacaaattgacatttacctacggacaatgtatagttgaaattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggatttt 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4141756 agacaaattgacatttacctatggacaatgtatagttgaaattaaatagttgaattctgaacttttacttacagaaaaatgacattttatgacggatttt 4141855  T
Q  114 gtccgtaggtacaagtg 130  Q
    |||||||| ||||||||    
T  4141856 gtccgtagttacaagtg 4141872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 9779781 - 9779894
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    ||||||||||   ||||||||||||  |||||||| | |||| | |||| |||| |||||||  |||||||||||  | ||||||| |||| ||||||||    
T  9779781 cacagacaaacacacatttacctacaaacaatgtacaattgatagtaaaatagtggaattctagacttttacttatgggaaaatgatatttaatgacgga 9779880  T
Q  110 ttttgtccgtaggt 123  Q
    ||||||||||||||    
T  9779881 ttttgtccgtaggt 9779894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 4141897 - 4141941
Alignment:
Q  155 caaattttaaagcccctttaagtttgaggccctgtgccaaggacc 199  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  4141897 caaattttgaagcctctttaagtttgaggccctgtgccaaggacc 4141941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 7503942 - 7503887
Alignment:
Q  74 acttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 129  Q
    |||||||| |||| ||||||||||||| ||||| ||||||||| |||| |||||||    
T  7503942 acttttacctacaaaaaaatgacatttaatgacagattttgtctgtagatacaagt 7503887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 9779927 - 9779971
Alignment:
Q  168 ccctttaagtttgaggccctgtgccaaggaccttgatgcacttgc 212  Q
    ||||||||| |||||| | ||||||||||| ||||||||||||||    
T  9779927 ccctttaagcttgaggtcttgtgccaaggaacttgatgcacttgc 9779971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 5031297 - 5031193
Alignment:
Q  23 gacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtag 121  Q
    |||||||||||||| |||||||||| |||| | |||| ||||||||||||| ||||||| |||  ||||||||||||||  ||||| |||||||||||||    
T  5031297 gacatttacctacgaacaatgtataattgacagtaaaatagttgaattctggacttttatttatggaaaaatgacatttagtgacgaattttgtccgtag 5031198  T
Q  122 gtaca 126  Q
    |||||    
T  5031197 gtaca 5031193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 26554366 - 26554476
Alignment:
Q  18 aaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtc 116  Q
    |||| ||||||||| ||||||||||||||  | || | | |||||||||||||  | |||||||| |||||| |||||||||||  ||||| ||||||||    
T  26554366 aaatagacatttacttacggacaatgtattatggacagtaaaatagttgaatttcggacttttacctacagataaatgacatttagtgacgtattttgtc 26554465  T
Q  117 cgtaggtacaa 127  Q
    |||||||||||    
T  26554466 cgtaggtacaa 26554476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 3516841 - 3516953
Alignment:
Q  18 aaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtc 116  Q
    |||| |||||||||||||||| |||||||| |||| ||| |||||||||||||||  |||||||| |||  |||||||||||||  ||||| ||||||||    
T  3516841 aaatagacatttacctacggagaatgtataattgacaataaaatagttgaattctagacttttacctacgaaaaaatgacatttagtgacgaattttgtc 3516940  T
Q  117 cgtaggtacaagt 129  Q
    |||||||| ||||    
T  3516941 cgtaggtataagt 3516953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 29236622 - 29236550
Alignment:
Q  57 aaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 129  Q
    |||||||||| ||||| |||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||    
T  29236622 aaatagttgatttctggacttttacctacggaaaaatgacatttagtgacggattttgtccgtaggtacaagt 29236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 11167120 - 11167177
Alignment:
Q  155 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttgc 212  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  11167120 caaattttgaagcccctttaagtttgaggccctgtgccaagggcctagatgcacttgc 11167177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 9860244 - 9860125
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    ||||||||||| ||||||||||||| ||||||| ||  |||| | |||| |||||||||||| ||||||||| ||| |||||| || |||| |||| |||    
T  9860244 cacagacaaatagacatttacctacagacaatgcatcattgacagtaaaatagttgaattctaaacttttacctacggaaaaaagatatttaatgaagga 9860145  T
Q  110 ttttgtccgtaggtacaagt 129  Q
    ||||||| ||||||||||||    
T  9860144 ttttgtctgtaggtacaagt 9860125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 6120084 - 6120191
Alignment:
Q  23 gacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtag 121  Q
    |||||||||| ||||| |||||||| |||| | |||| ||||||||||||| |||| |||  |  ||||||||||||||  |||| |||||||||| |||    
T  6120084 gacatttaccgacggataatgtataattgacagtaaaatagttgaattctggacttctacccaaggaaaaatgacatttagtgaccgattttgtccatag 6120183  T
Q  122 gtacaagt 129  Q
    ||||||||    
T  6120184 gtacaagt 6120191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 26304386 - 26304314
Alignment:
Q  57 aaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 129  Q
    |||| |||||||| |  |||||||| |||||||||||||||||| ||||  |||||||| |||||||| ||||    
T  26304386 aaattgttgaattttagacttttacctacagaaaaatgacattttatgatagattttgttcgtaggtagaagt 26304314  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 30351220 - 30351293
Alignment:
Q  57 aaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagtg 130  Q
    ||||||||||||| || |||||||| ||   |||||||||||||  ||| |||||||| |||||||| ||||||    
T  30351220 aaatagttgaattatggacttttacctaagaaaaaatgacatttagtgatggattttgaccgtaggtgcaagtg 30351293  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 22607389 - 22607433
Alignment:
Q  166 gcccctttaagtttgaggccctgtgccaaggaccttgatgcactt 210  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||||    
T  22607389 gccccttaaagtttgtggccatgtgccaagggccttgatgcactt 22607433  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 41151340 - 41151223
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttgaa-attaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    |||| |||||| ||||||||||||||||||||||||| ||||| || | |||||||||||| | |||||||||||  | ||||| ||||||  |||| ||    
T  41151340 cacaaacaaatagacatttacctacggacaatgtataattgaacataacatagttgaattccggacttttacttatgggaaaataacatttagtgacaga 41151241  T
Q  110 ttttgtccgtaggtacaa 127  Q
    ||||||| | ||||||||    
T  41151240 ttttgtctgcaggtacaa 41151223  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 38703384 - 38703441
Alignment:
Q  155 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttgc 212  Q
    |||||||| | || ||||| ||||||| ||| ||||||||||||||||||||||||||    
T  38703384 caaattttgaggctcctttgagtttgaagccttgtgccaaggaccttgatgcacttgc 38703441  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 27232417 - 27232473
Alignment:
Q  155 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttgc 212  Q
    |||||||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||||    
T  27232417 caaattttgaagcccctctaactttaaggccctgtgccaagg-gcttgatgcacttgc 27232473  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 19546580 - 19546648
Alignment:
Q  12 acagacaaattgacatttacctacggacaatgtatagttgaaattaaatagttgaattctgaactttta 80  Q
    ||||||||||  ||||||||||| |||||||||||| |||| | ||||||||||||||||| |||||||    
T  19546580 acagacaaatatacatttacctatggacaatgtataattgacagtaaatagttgaattctggactttta 19546648  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 15954441 - 15954324
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    ||||||||||| |||||||||||| | |||||||||| |||| | | ||||||||||||| |   ||||||| |||||||||||  |||||  ||||  |    
T  15954441 cacagacaaatagacatttacctatgaacaatgtataattgacagtaaaatagttgaattataggcttttacctacagaaaaatcgcatttagtgacata 15954342  T
Q  110 ttttgtccgtaggtacaa 127  Q
    || |||||||||||||||    
T  15954341 ttatgtccgtaggtacaa 15954324  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 32188462 - 32188360
Alignment:
Q  26 atttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggta 124  Q
    ||||||||||| |||||||||| |||| | |||| |||||||||| |||| |||||| ||| |||| |||| ||||  || | |||||||||| ||||||    
T  32188462 atttacctacgaacaatgtataattgacagtaaaatagttgaattatgaatttttacctacggaaacatgatatttagtggcagattttgtccttaggta 32188363  T
Q  125 caa 127  Q
    |||    
T  32188362 caa 32188360  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 11112927 - 11113015
Alignment:
Q  39 caatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaa 127  Q
    ||||||||| |||| ||| ||||| ||||||| |||| ||| || ||| |||||||||||||| |||| ||||||||| |||||||||||    
T  11112927 caatgtataattgacaataaaataattgaattatgaattttcacctac-gaaaaatgacatttaatgatggattttgttcgtaggtacaa 11113015  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 2716566 - 2716621
Alignment:
Q  434 ggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaa 489  Q
    ||||| || |||| || ||||||||||||||||||||| ||||||||||| |||||    
T  2716566 ggtctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaa 2716621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 2723189 - 2723244
Alignment:
Q  434 ggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaa 489  Q
    ||||| || |||| || ||||||||||||||||||||| ||||||||||| |||||    
T  2723189 ggtctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaa 2723244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 489
Target Start/End: Original strand, 2745020 - 2745075
Alignment:
Q  434 ggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcacctcaa 489  Q
    ||||| || |||| || ||||||||||||||||||||| ||||||||||| |||||    
T  2745020 ggtctctcctttgcaatttcttgcacacaaagaagtccaatgtgtatgcatctcaa 2745075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 40453257 - 40453292
Alignment:
Q  177 tttgaggccctgtgccaaggaccttgatgcacttgc 212  Q
    |||||||||||||||||||| |||||||||||||||    
T  40453257 tttgaggccctgtgccaagggccttgatgcacttgc 40453292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 32973628 - 32973526
Alignment:
Q  17 caaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgt 115  Q
    ||||| |||||||||| ||| | |||||||| |||| ||| ||||||| ||||| |  |||||||  ||||||||||||||||||  ||||| || ||||    
T  32973628 caaatagacatttaccaacgaaaaatgtataattgagaataaaatagtagaattttagacttttagctacagaaaaatgacatttagtgacgaatgttgt 32973529  T
Q  116 ccg 118  Q
    |||    
T  32973528 ccg 32973526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 2461476 - 2461419
Alignment:
Q  155 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttgc 212  Q
    |||||||| | ||||||  || || |||||| ||||||||||||||||||||||||||    
T  2461476 caaattttgaggcccctcaaacttagaggccatgtgccaaggaccttgatgcacttgc 2461419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 19116804 - 19116686
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    |||||| ||||  ||||||||||||  |||||||||| |||| | |||| ||||||||||||| | |||||| || | |||||||| ||||   ||| ||    
T  19116804 cacagaaaaatctacatttacctacatacaatgtataattgatagtaaaatagttgaattctggagttttacctaaa-aaaaatgaaatttagcgacaga 19116706  T
Q  110 ttttgtccgtaggtacaagt 129  Q
    ||||||||||||||||||||    
T  19116705 ttttgtccgtaggtacaagt 19116686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 26618587 - 26618654
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaactt 77  Q
    |||| |||||| ||||||||  |||||||||||||||||||| | | ||||||||||||||| |||||    
T  26618587 cacaaacaaatagacatttatatacggacaatgtatagttgacagtaaaatagttgaattctaaactt 26618654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 2689 - 2579
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    |||| |||||| ||||||||| |||  | |||||||| |||| | |||| || ||||||| || |||||||| ||||||||||||||| ||  ||||| |    
T  2689 cacacacaaatagacatttacatacataaaatgtataattgatagtaaaataattgaattttggacttttacctacagaaaaatgaca-ttagtgacgaa 2591  T
Q  110 ttttgtccgtag 121  Q
    ||||||||||||    
T  2590 ttttgtccgtag 2579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 8760073 - 8760018
Alignment:
Q  74 acttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 129  Q
    |||||||| |||| |||||||| ||||  ||||||||||||||||||| |||||||    
T  8760073 acttttacctacaaaaaaatgatatttagtgacggattttgtccgtagatacaagt 8760018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 30860702 - 30860589
Alignment:
Q  11 cacagacaaattgacatttacctacggacaatgtatagttg-aaattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacgga 109  Q
    |||| |||||| ||||||||||||||||||| ||||| |||  | | |||||||||||||||  |||||||  ||||| ||||||||||||  |||| ||    
T  30860702 cacatacaaatagacatttacctacggacaaggtataattgttagtaaaatagttgaattctagacttttatctacag-aaaatgacatttagtgacaga 30860604  T
Q  110 ttttgtccgtaggtac 125  Q
     ||||||||| |||||    
T  30860603 -tttgtccgttggtac 30860589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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