View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1957_high_5 (Length: 571)

Name: NF1957_high_5
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1957_high_5
NF1957_high_5
[»] chr7 (3 HSPs)
chr7 (302-553)||(8030437-8030688)
chr7 (253-420)||(18000633-18000801)
chr7 (253-307)||(21586143-21586197)
[»] chr3 (3 HSPs)
chr3 (253-497)||(36153408-36153652)
chr3 (378-457)||(3523983-3524062)
chr3 (253-288)||(21785781-21785816)
[»] chr8 (3 HSPs)
chr8 (253-420)||(16796661-16796829)
chr8 (253-420)||(18207079-18207247)
chr8 (253-286)||(43381655-43381688)
[»] chr4 (2 HSPs)
chr4 (253-420)||(13103396-13103564)
chr4 (262-323)||(12090398-12090459)
[»] chr6 (1 HSPs)
chr6 (253-420)||(2270190-2270357)
[»] chr5 (2 HSPs)
chr5 (253-307)||(34453188-34453242)
chr5 (253-286)||(8182416-8182449)
[»] chr1 (2 HSPs)
chr1 (253-307)||(47722435-47722489)
chr1 (253-307)||(47729427-47729481)
[»] scaffold0019 (1 HSPs)
scaffold0019 (253-307)||(163013-163067)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 302 - 553
Target Start/End: Complemental strand, 8030688 - 8030437
Alignment:
Q  302 accctagattcctgagtgggaaatctctcaccctaatccatttaatgctgattttgaatttcaaattttactataatggatatttatgattgtagtgcac 401  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  8030688 accctagattactgagtgggaaatctctcaccctaatccatttaatgctgattttgaatttcaaatttcactataatggatagttatgattgtagtgcac 8030589  T
Q  402 acaaccacagtcttttggtattccaatttgcaatcaattgtttgcagtttcccaaagttagtttctatcagatgaggagttttactcttctttatatcca 501  Q
    ||| ||||| ||||||||| |||| || ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8030588 acagccacaatcttttggttttccgatctgcaatcaattgtttgccgttttccaaagttagtttctatcagacgaggagttttactcttctttatatcca 8030489  T
Q  502 tctttctaacaaaactctttatacccctttctctttctatctctctcatttt 553  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8030488 tctttctaacaaaactctttatacccctgtctctttctatctctctcatttt 8030437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 253 - 420
Target Start/End: Original strand, 18000633 - 18000801
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaaatctctcaccctaatccatttaatgctga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || | ||||  | || || |||||||||||| ||||||| ||||    
T  18000633 atcttaatatataatactaaggttcacaatgcatgctccatttgtctaaaacctaaatccttgagcagcaattccctcaccctaatctatttaattctga 18000732  T
Q  353 ttttgaatttc-aaattttactataatggatatttatgattgtagtgcacacaaccacagtcttttggt 420  Q
    |||| || ||| |||||| ||| || |||||| ||||||||| | || ||||| ||||||||| |||||    
T  18000733 tttttaagttctaaatttaactttagtggataattatgattgaaatgtacacagccacagtctgttggt 18000801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 21586197 - 21586143
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaacccta 307  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  21586197 atcttaatatataatactaaggttcataatgcatgctccttttgcctaaacccta 21586143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 9e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 253 - 497
Target Start/End: Original strand, 36153408 - 36153652
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaaatctctcaccctaatccatttaatgctga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | || ||||||||||||||||||||||||||||||||||    
T  36153408 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctattttcataagcgggaaatctctcaccctaatccatttaatgctga 36153507  T
Q  353 ttttgaatttcaaattttactataatggatatttatgattgtagtgcacacaaccacagtcttttggtattccaatttgcaatcaattgtttgcagtttc 452  Q
    ||||||||||||||||| |||||| |||||| ||||||||||| |||||||| |||||  |||||||| ||||| | ||||||||||||||||| |||||    
T  36153508 ttttgaatttcaaatttaactatagtggatagttatgattgtaatgcacacagccacaaacttttggttttccattctgcaatcaattgtttgccgtttc 36153607  T
Q  453 ccaaagttagtttctatcagatgaggagttttactcttctttata 497  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  36153608 ccaaagttggtttctatcagatgaggagttttactcttatttata 36153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 457
Target Start/End: Complemental strand, 3524062 - 3523983
Alignment:
Q  378 tggatatttatgattgtagtgcacacaaccacagtcttttggtattccaatttgcaatcaattgtttgcagtttcccaaa 457  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||  | | ||||||| |||| |||| |||||    
T  3524062 tggatatttatgattgtattgcacacaaccacaatgttttggtattccaatcagtattcaattgcttgccgttttccaaa 3523983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 21785781 - 21785816
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgc 288  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21785781 atcttaatatataatacgaaggttcacaatgcatgc 21785816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 253 - 420
Target Start/End: Original strand, 16796661 - 16796829
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaaatctctcaccctaatccatttaatgctga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| || || || |||||||||||| ||||||| ||||    
T  16796661 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaacctaaatccctgagcggcaattccctcaccctaatctatttaattctga 16796760  T
Q  353 -ttttgaatttcaaattttactataatggatatttatgattgtagtgcacacaaccacagtcttttggt 420  Q
     |||||| || ||||||| ||| || |||||| ||||||||| | |||||||| |||| ||||||||||    
T  16796761 tttttgagttccaaatttaactgtagtggataattatgattgaaatgcacacatccactgtcttttggt 16796829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 253 - 420
Target Start/End: Original strand, 18207079 - 18207247
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaaatctctcaccctaatccatttaatgctga 352  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||| |||| || ||| || ||||| || |||||||||||| ||||||| ||||    
T  18207079 atcttaatatataatactaaggttcacagtgcatgttccatttgcctaaaacctaaatccctcagcgggaattccctcaccctaatctatttaattctga 18207178  T
Q  353 -ttttgaatttcaaattttactataatggatatttatgattgtagtgcacacaaccacagtcttttggt 420  Q
     ||||||||| ||||||| |||||| |||||| ||||||||| | |||| ||| | |||||||||||||    
T  18207179 tttttgaattccaaatttaactatagtggataattatgattgaaatgcagacagctacagtcttttggt 18207247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 43381655 - 43381688
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcat 286  Q
    ||||||||||||||||| ||||||||||||||||    
T  43381655 atcttaatatataatacgaaggttcacaatgcat 43381688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 253 - 420
Target Start/End: Complemental strand, 13103564 - 13103396
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaaatctctcaccctaatccatttaatgctga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| || |||||| || || ||  ||||||||||| ||||||| ||||    
T  13103564 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaacacctaaatccctgagcggcaattccttcaccctaatctatttaattctga 13103465  T
Q  353 -ttttgaatttcaaattttactataatggatatttatgattgtagtgcacacaaccacagtcttttggt 420  Q
     |||| |||| ||||||| | | || |||||| ||||||||| | |||||||| ||||| |||||||||    
T  13103464 tttttaaattacaaatttaattgtagtggataattatgattgaaatgcacacagccacaatcttttggt 13103396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 12090459 - 12090398
Alignment:
Q  262 tataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaa 323  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||  |||||||| |||||    
T  12090459 tataatactaaagttcacaatgcatgctccttttgcctaaaccctaacttcctgagcgggaa 12090398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 253 - 420
Target Start/End: Complemental strand, 2270357 - 2270190
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaaccctagattcctgagtgggaaatctctcaccctaatccatttaatgctga 352  Q
    |||||||||||||||| |||||||| |||||||| ||  ||||||||||| |||| || ||| ||  |||| || |||||||||||| ||||||| ||||    
T  2270357 atcttaatatataatattaaggttcgcaatgcatactttatttgcctaaaacctaaatccctcagcaggaattccctcaccctaatctatttaattctga 2270258  T
Q  353 tttt-gaatttcaaattttactataatggatatttatgattgtagtgcacacaaccacagtcttttggt 420  Q
    |||| ||||| ||||||| | |||| |||||| ||||||||| | |||| ||||||| |||||||||||    
T  2270257 tttttgaattccaaatttaa-tatagtggataattatgattgaaatgcagacaaccatagtcttttggt 2270190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 34453188 - 34453242
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaacccta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  34453188 atcttaatatataatactaaggttcacaatgcatgctccatttgtctaaaaccta 34453242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 8182449 - 8182416
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcat 286  Q
    |||||||||||||||||||| |||||||||||||    
T  8182449 atcttaatatataatactaaagttcacaatgcat 8182416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 47722435 - 47722489
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaacccta 307  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  47722435 atcttaatatataatacaaaggttcacaatgcatgcttcatttgcctaaaaccta 47722489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 47729427 - 47729481
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaacccta 307  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  47729427 atcttaatatataatacaaaggttcacaatgcatgcttcatttgcctaaaaccta 47729481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 163067 - 163013
Alignment:
Q  253 atcttaatatataatactaaggttcacaatgcatgctccatttgcctaaacccta 307  Q
    ||||||||||||||||| |||||||| ||||||||| |  |||||| ||||||||    
T  163067 atcttaatatataatacgaaggttcataatgcatgccctttttgccaaaacccta 163013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University