View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_high_8 (Length: 499)
Name: NF1957_high_8
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 41821884 - 41822353
Alignment:
| Q |
1 |
cttgatacattataacaaattcaaattacatagtatagcttaattacattgattatttgaatttcttctatccatttttcgagtcgtatcaacatttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41821884 |
cttgatacattataacaaattcaaattacatagtatagcttaattacattgattatttggatttcttctatccatttttcgagtcgtatcaacatttagt |
41821983 |
T |
|
| Q |
101 |
ttccctatagttctattcatattttccagtgaaactatcttttgtcaattcacttgtgagacaggcttcagtcgctcaaatcttgtgcatgtgttggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
41821984 |
ttccctatagttctattcatattttctagtgaaactctcttttgtcaattcacttgtgagacaggcctca----ctcaaatcttgtgcatgtgttggtgc |
41822079 |
T |
|
| Q |
201 |
ttcaaaagagttcttgttctactaatttgaagggctatgtccaatcgacttttttggatgataatttaattgcagaaagatttatgtaacaagctcaaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41822080 |
ttcaaaagagttcttgttctactaatttgaacggctatgtccaatcgacttttttggatgataatttaattgcagaaagatttatgtaacaagctcaaag |
41822179 |
T |
|
| Q |
301 |
caaacaaactaataacatgataacatacctaattggccaatgaaggccgtatcgaccagtgatgctataggatcagctgtcaaagccattgcagcaggca |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41822180 |
caaacaaacta--------ataacatacctaattggccaatgaaggccgtatcgaccagtgatgctataggatcagctgtcaaagccattgcagcaggca |
41822271 |
T |
|
| Q |
401 |
atgcaattgacaatatttcgcgaccaagatcgtctaatttaaacactagtctgcagtaaaaaggaaatcaagagttaaacct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41822272 |
atgcaattgacaatatttcgcgaccaagatcgtctaatttaaacactagtctgcagtaaaaaggaaatcaagagttaaacct |
41822353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University