View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_1 (Length: 776)
Name: NF1957_low_1
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 30166987 - 30166503
Alignment:
| Q |
16 |
atcaccccaacccataaacaccactttccttaaaaccaccaccagtccaccacaccgcccttaccttcagtctaatattcat-aatccatgtaaccaact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
30166987 |
atcaccccaacccataaacaccactttccttaaaaccaccaccagtccaccacaccgcccttaccttcagtctaatattcgtgaatccatgtaaccaact |
30166888 |
T |
|
| Q |
115 |
aaccctctcttactaaccccaaaaaataaagttcacgatcagaaatcatagcacaaaaaattagagaactcaacacaaaaatgcacaatatttgatgagt |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30166887 |
aatcctctcttactaaccccaaaaaataaagttcacaatcagaaatcatagcacaaaaaattagagaactcaacacaaaaatgcacaatatttgatgagt |
30166788 |
T |
|
| Q |
215 |
ctaaatgaagctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactataaagaagaatccttagaatgatcctaaaagtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30166787 |
ctaaatgaagctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactatgaagaagaatccttagaatgatcctaaaagtg |
30166688 |
T |
|
| Q |
315 |
aggagtaaagaaaaaacggaaaaagtcctatatatacctcacacttcatctcagggtcccaatcctttaaggatactcgttgtgtagcaatataagttac |
414 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30166687 |
aggagtaaagaaaaaatggaaaaggtcctatatatacctcacacttcatctcagggtcccaatcctttaaggatactcgttgtgtagcaatataagttac |
30166588 |
T |
|
| Q |
415 |
ataacaaagccctaaaagaacacaacaagcacacaaacaccttgcacaatttcaataatgcagacataaagaaagcactatccat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30166587 |
ataacaaagccctaaaagaacacaacaagcacacaaacaccttgcacaatttcaataatgcagacataaagaaagcaccatccat |
30166503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 567 - 756
Target Start/End: Complemental strand, 30166435 - 30166246
Alignment:
| Q |
567 |
gcatagagtcaaagagactaaacaacctactggcaatgactagacaaatttcatcttcactgaggagctgcaaggaggaaacagcagagctatgtgattt |
666 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30166435 |
gcatagagtcaaagagactaaacaacctactggcaatgactagacaaatttcatcttcactaaggagctgcaaggaggaaacagcagagctatgtgattt |
30166336 |
T |
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| Q |
667 |
gtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcactt |
756 |
Q |
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| T |
30166335 |
gtgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcactt |
30166246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 86 - 499
Target Start/End: Original strand, 43163661 - 43164070
Alignment:
| Q |
86 |
tctaatattcataatccatgtaaccaactaaccctctcttactaaccccaaaaaata-aagttcacgatcagaaatcatagcacaaaaaattagagaact |
184 |
Q |
| |
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|||||||||||| |||||| | |||||||| |||||| ||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||| |
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| T |
43163661 |
tctaatattcatcatccatctgaccaactatccctct--tactaaccccaaaaaattcaagtccacaatcagaaatcctagcacaacaaattagagaact |
43163758 |
T |
|
| Q |
185 |
caacacaaaaatgcacaatatttgatgagtctaaatgaagctgatgtattagtaactaaacagatggaggaagcaccaacttttgctcaagaaactataa |
284 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||| |||||||| |||||||| | |
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| T |
43163759 |
taacacaaccatatacaatatttgatgagtctaaatgaagctaaggtgttagtaactaaacagatggaggaaacacccgcttttgcttaagaaactgt-- |
43163856 |
T |
|
| Q |
285 |
agaagaatccttagaatgatcctaaaagtgaggagtaaagaaaaaacggaaaaagtcctatatatacctcacacttcatctcagggtcccaatcctttaa |
384 |
Q |
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||||||||||| ||||| || | | |||||||||| ||||| | | ||||||||||||||||||||||||| ||||||||| |||||||||| |||| |
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| T |
43163857 |
-gaagaatcctttgaatgttctttatagtgaggagtgaagaagatatggaaaaagtcctatatatacctcacctttcatctca-ggtcccaatcatttat |
43163954 |
T |
|
| Q |
385 |
ggatactcgttgtgt-agcaatataagttacataacaaagccctaaaagaacacaacaagcacacaaacaccttgcacaatttcaataatgcagacataa |
483 |
Q |
| |
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|||| ||| |||||| ||||| |||||||||||||||||||| || ||||||| ||||||| |||||| ||| ||||||||||| || ||| |||||| |
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| T |
43163955 |
ggatcctcattgtgtaagcaacataagttacataacaaagccaaaatagaacacgacaagcattcaaacatcttacacaatttcaacaaagcaaacataa |
43164054 |
T |
|
| Q |
484 |
agaaagcactatccat |
499 |
Q |
| |
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|||||||| ||||||| |
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| T |
43164055 |
agaaagcattatccat |
43164070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 568 - 756
Target Start/End: Original strand, 43164160 - 43164348
Alignment:
| Q |
568 |
catagagtcaaagagactaaacaacctactggcaatgactagacaaatttcatcttcactgaggagctgcaaggaggaaacagcagagctatgtgatttg |
667 |
Q |
| |
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|||||||| |||||| ||||||| | ||||| ||||| || || || ||||||||| || |||||||||||||| ||||| ||||||||| | |||| | |
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| T |
43164160 |
catagagtggaagagattaaacaaacaactggaaatgagtaaacgaaattcatcttcgctaaggagctgcaaggaagaaacggcagagctacgcgattcg |
43164259 |
T |
|
| Q |
668 |
tgaactggcatttgagctgctgataaagatcacctctactctcgattatgttatgtcttttcccagtttcagtattctgcctatcactt |
756 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| | || ||||| |||| |||||||||||| |
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| T |
43164260 |
tgaaccaacatttgagctgctgataaagatcaactctactctcaattatgttatgtcttcttgcaatttcactattttgcctatcactt |
43164348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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