View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_low_11 (Length: 458)
Name: NF1957_low_11
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 42182757 - 42182333
Alignment:
| Q |
11 |
cagagacattataatgatatattgagctatgtactttgtcctatgtctctcttttttaagtttatatctttttctttgcaaaaaagcattatataataaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42182757 |
cagagacattataatgatatattgagctatgtactttgtcctatgtctctcttttttaagtttatatctttttctttgcaaaaaagcattatataataaa |
42182658 |
T |
|
| Q |
111 |
gtcacacacctcaaagatacccaggtaagaaaatgtatacttaattttgtacattaggttaat----taatcaacaagttcatcagttcaaactgtcatg |
206 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42182657 |
gtcacacagctaaaagatacccaggtaagaaaatgtatacttaattttgtacattaggttaattaattaatcaacaagttcatcagttcaaactgtcatg |
42182558 |
T |
|
| Q |
207 |
catgactcatgaaattgtctgaatagtgaatacacacatgcaaaatctacctaagtctagaattaccatgcacacaacacaaaccaccaatgcgttatgt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42182557 |
-------catgaaattgtctgaatagtgaatacacacatgcaaaatctacctaagtctagaattaccatgcacacaacacaaactaccaatgcgttatgt |
42182465 |
T |
|
| Q |
307 |
ttctttctcaaaaaagtcatcaatatttaactatataccatgtgaatagggatggaaccagggnnnnnnnntccaagggagcaaaatttaatacatttta |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42182464 |
ttctttctcaaaaaagtcatcaatatttaactatataccatgtgaatagggatggaaccaggg-aaaaaaatccaagggagcaaaatttaatacatttta |
42182366 |
T |
|
| Q |
407 |
aagaggagagaatattaagaatcatatatagca |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42182365 |
aagaggagagaatattaagaatcatatatagca |
42182333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University