View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_low_12 (Length: 448)
Name: NF1957_low_12
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 1836980 - 1837418
Alignment:
| Q |
1 |
gcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtcctctaagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1836980 |
gcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtcctctaagca |
1837079 |
T |
|
| Q |
101 |
acaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaaca------tgttggcgccaccagataacaacagtggaacagg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
1837080 |
acaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgttggcgccactagataacaacagtggaacagg |
1837179 |
T |
|
| Q |
195 |
ct---cagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaatgattcgcctatggattctcctcct |
291 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1837180 |
ctgctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaacgattcgcctatggattctcctcct |
1837279 |
T |
|
| Q |
292 |
acatggatgcaaatgtcacacccctttatgatggatgatcaaaccatgttatatggtaatggctatgaatttgaagaaaatgaatgggaagacatacaac |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1837280 |
acatggatgcaaatgtcacacccctttatgatggatgatcaaaacatgttatatggtaatggctatgaatttgaagaaaatgaatgggaagacatacaac |
1837379 |
T |
|
| Q |
392 |
aacacagtgattctctatgggatccttaacttggtacgt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1837380 |
aacacagtgattctctatgggatccttaacttggtacgt |
1837418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University