View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_15 (Length: 390)
Name: NF1957_low_15
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 192 - 379
Target Start/End: Original strand, 43236652 - 43236839
Alignment:
| Q |
192 |
acttgaaattatgcggactccacttcgaataaaagcaacggccatttcacagccatcaattgagtaaacaacacatgtgagggttctaatacacttggaa |
291 |
Q |
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| T |
43236652 |
acttgaaattatgcggactccacttcgaataaaagcaacggccatttcacagccatcaattgagtaaacaacacatgtgagggttctaatacacttggaa |
43236751 |
T |
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| Q |
292 |
gatcaaaaggattaaaatgaatccattttgacctatcaaaactagactcgtgtgtcaatcttaaggtggagagtccaacaatgagaat |
379 |
Q |
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| T |
43236752 |
gatcaaaaggatcaaaatgaatccattttaacctatcaaaactagactcatgtgtcaatctcagggtggagaatccaacaatgagaat |
43236839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 43236449 - 43236621
Alignment:
| Q |
19 |
ctgataccatatttaatatagaatcaacaacaacaaaattacaaaggagggttgggcttcattacaatgagaaaaatttattgaatacaaaatgtactct |
118 |
Q |
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| T |
43236449 |
ctgataccatatttaatatagaatcaacaacaacaaaattacaaaggagggtagggcttcattacaatgagaaaaatttattgaatacaaaatgtactct |
43236548 |
T |
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| Q |
119 |
gagaatatatagtgaaatataaatagattaaactattgttagcatgaatacaaccaaagaccccattacatac |
191 |
Q |
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| T |
43236549 |
gagaatgtatagtgaaatataaatagactaaactattgttagcatgaatacaaccaaaaaccccattacatac |
43236621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 5264503 - 5264543
Alignment:
| Q |
113 |
tactctgagaatatatagtgaaatataaatagattaaacta |
153 |
Q |
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| T |
5264503 |
tactctaagaatatatagtgaaatataaatacactaaacta |
5264543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 41637161 - 41637128
Alignment:
| Q |
120 |
agaatatatagtgaaatataaatagattaaacta |
153 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
41637161 |
agaatatacagtgaaatataaatagattaaacta |
41637128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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