View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1957_low_16 (Length: 386)

Name: NF1957_low_16
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1957_low_16
NF1957_low_16
[»] chr2 (1 HSPs)
chr2 (61-127)||(11523995-11524062)
[»] chr7 (1 HSPs)
chr7 (61-127)||(20463487-20463553)
[»] chr5 (1 HSPs)
chr5 (61-127)||(34673868-34673934)
[»] chr1 (1 HSPs)
chr1 (61-127)||(15333486-15333552)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 11523995 - 11524062
Alignment:
Q  61 agaggaaatagcttatagtttttcatta-aaaattaaagatccaatacaagaaggtacaacatcaaaa 127  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  11523995 agaggaaatagcttatagtttttcattataaaattaaagatccaatacaagaaggtacaacattaaaa 11524062  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 20463487 - 20463553
Alignment:
Q  61 agaggaaatagcttatagtttttcattaaaaattaaagatccaatacaagaaggtacaacatcaaaa 127  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  20463487 agaggaaatagcttatagcttttcattagaaattaaacatccaatacaagaaggtacaacattaaaa 20463553  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 34673934 - 34673868
Alignment:
Q  61 agaggaaatagcttatagtttttcattaaaaattaaagatccaatacaagaaggtacaacatcaaaa 127  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  34673934 agaggaaatagcttatagcttttcattagaaattaaagatccaatacaagaaggtagaacattaaaa 34673868  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 15333552 - 15333486
Alignment:
Q  61 agaggaaatagcttatagtttttcattaaaaattaaagatccaatacaagaaggtacaacatcaaaa 127  Q
    |||| |||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||    
T  15333552 agagaaaatagtttatagtttttcattagaaattaaaaatcgaatacaagaaggtacaacattaaaa 15333486  T

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