View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1957_low_17 (Length: 362)

Name: NF1957_low_17
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1957_low_17
NF1957_low_17
[»] chr1 (3 HSPs)
chr1 (4-345)||(11663625-11663966)
chr1 (197-342)||(38511146-38511291)
chr1 (57-173)||(38510967-38511084)
[»] chr8 (2 HSPs)
chr8 (4-289)||(13767684-13767960)
chr8 (242-352)||(13767576-13767686)
[»] chr4 (8 HSPs)
chr4 (4-177)||(35913741-35913914)
chr4 (202-345)||(35913915-35914058)
chr4 (198-352)||(45355953-45356107)
chr4 (198-352)||(45369694-45369848)
chr4 (96-173)||(45355820-45355895)
chr4 (96-173)||(45369561-45369636)
chr4 (42-114)||(45355615-45355689)
chr4 (42-114)||(45369356-45369430)
[»] chr5 (3 HSPs)
chr5 (178-352)||(17901637-17901813)
chr5 (194-299)||(18928201-18928304)
chr5 (42-173)||(17901851-17901969)
[»] chr2 (1 HSPs)
chr2 (270-298)||(41213244-41213272)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 345
Target Start/End: Complemental strand, 11663966 - 11663625
Alignment:
Q  4 catgggacagatcatacgccttttaatagttggatgtttaggcggtgcacttttattggagcaataaatgtcacattgttttttctattattacaagtca 103  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11663966 catgggacagatcatacgacttttaatatttggatgtttaggcggtgcacttttattggaacaataaatgtcacattgttttttctattattacaagtca 11663867  T
Q  104 tattatatgttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactatcaaataatttgattgtttactgataagaacagtaat 203  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11663866 tattatattttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactatcaaataatttgattgttcactgataagaacagtaat 11663767  T
Q  204 aatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatattttttaaaaataattccgag 303  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11663766 aatttgaaataatagagaaaactgaagacacatctctattatcaaatatgatataagggtattttgataattatatatattttttaaaaataattcccag 11663667  T
Q  304 gaacttaaattttcaaccaaacatattttttgaacattcctt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11663666 gaacttaaattttcaaccaaacatattttttgaacattcctt 11663625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 38511146 - 38511291
Alignment:
Q  197 cagtaataatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatattttttaaaaataa 296  Q
    |||||||||| ||||||||||||||||||||||||||  ||||  ||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||    
T  38511146 cagtaataatatgaaataatagagaaaactgaagacatttctcttttatcaaatataatataagggtattttgattattatatataatttttaaaaataa 38511245  T
Q  297 ttccgaggaacttaaattttcaaccaaacatattttttgaacattc 342  Q
    || | ||||  | ||||| ||||| |||||||||||||||||||||    
T  38511246 tttccaggatttcaaattatcaacaaaacatattttttgaacattc 38511291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 38510967 - 38511084
Alignment:
Q  57 tattggagcaataaatgtcacattgttttttctattattacaa--gtcatattatatgttgattgcatcaataaaagaaaa--catagatgaattgatgt 152  Q
    ||||||| |||||||||||| ||| ||||| ||||||||||||  ||||||||| || |||||||||||||||||| ||||  |||||||||||||||||    
T  38510967 tattggaacaataaatgtcatattattttt-ctattattacaaaagtcatatta-at-ttgattgcatcaataaaaaaaaaaacatagatgaattgatgt 38511063  T
Q  153 atgaaataaaactatcaaata 173  Q
    |||||||||||||||| ||||    
T  38511064 atgaaataaaactatcgaata 38511084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 13767960 - 13767684
Alignment:
Q  4 catgggacagatcatacgccttttaatagttggatgtttaggcggtgcacttttattggagcaataaatgtcacattgttttttctattattacaagtca 103  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  13767960 catgggacagatcatacgacttttaatatttggatgtttaggcggtacacttttattggaacaataaaggtcacattgttttttctattattacaagtca 13767861  T
Q  104 tattatatgttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactatcaaataatttgattgtttactgataagaacagtaat 203  Q
    |||||||| ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13767860 tattatattttgattgcatcaat---------catagatgaattgatgtatgaaataaaactatcaaataatttgattgttcactgataagaacagtaat 13767770  T
Q  204 aatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatatttttta 289  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13767769 aatttgaaataatagagaaaaatgaagacacatctctattaccaaatatgatataagggtattttgataattatatatttttttta 13767684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 13767686 - 13767576
Alignment:
Q  242 ttaccaaatatgatataagggtattttgataattatatatattttttaaaaataattccgaggaacttaaattttcaaccaaacatattttttgaacatt 341  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  13767686 ttaccaaatatgatataagggtattttgataattatatattttttttaaaaataattctcaggaacttaaattttcaaccaaacatattttttgaacatt 13767587  T
Q  342 ccttagaataa 352  Q
    |||| ||||||    
T  13767586 ccttggaataa 13767576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 35913741 - 35913914
Alignment:
Q  4 catgggacagatcatacgccttttaatagttggatgtttaggcggtgcacttttattggagcaataaatgtcacattgttttttctattattacaagtca 103  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35913741 catgggacagatcatacgacttttaatatttggatgtttaggcggtgcacttttattggagcaataaatgtcacattgttttttctattattacaagtca 35913840  T
Q  104 tattatatgttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactatcaaataattt 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35913841 tattatattttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaagtatcaaataattt 35913914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 202 - 345
Target Start/End: Original strand, 35913915 - 35914058
Alignment:
Q  202 ataatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatattttttaaaaataattccg 301  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  35913915 ataatttgaaataatagagaaaattgaagacacatctctattaccaaatatgatataagggtattttgataattatatatattttttaaaaataatttcc 35914014  T
Q  302 aggaacttaaattttcaaccaaacatattttttgaacattcctt 345  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  35914015 aggaacttaaattttcaaccaaacgtagtttttgaacattcctt 35914058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 45355953 - 45356107
Alignment:
Q  198 agtaataatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatattttttaaaaataat 297  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  45355953 agtaataatttaaaataatagagaaaactaaagacacgtctcctttaccaaatatgatacaagggtattttgataattatatatatattttaaaaataat 45356052  T
Q  298 tccgaggaacttaaattttcaaccaaacatattttttgaacattccttagaataa 352  Q
    ||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  45356053 tcccaggaattcaaattatcaaccaaacatattttttgaacattccttggaataa 45356107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 45369694 - 45369848
Alignment:
Q  198 agtaataatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatattttttaaaaataat 297  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  45369694 agtaataatttaaaataatagagaaaactaaagacacgtctcctttaccaaatatgatacaagggtattttgataattatatatatattttaaaaataat 45369793  T
Q  298 tccgaggaacttaaattttcaaccaaacatattttttgaacattccttagaataa 352  Q
    ||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  45369794 tcccaggaattcaaattatcaaccaaacatattttttgaacattccttggaataa 45369848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 45355820 - 45355895
Alignment:
Q  96 acaagtcatattatatgttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactatcaaata 173  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45355820 acaagtcatattattt--tgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactctcaaata 45355895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 45369561 - 45369636
Alignment:
Q  96 acaagtcatattatatgttgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactatcaaata 173  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45369561 acaagtcatattattt--tgattgcatcaataaaagaaaacatagatgaattgatgtatgaaataaaactctcaaata 45369636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 45355615 - 45355689
Alignment:
Q  42 taggcggtgcacttttattggagcaataaatgtcacattgttttttctattattac--aagtcatattatatgtt 114  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||||||| ||||    
T  45355615 taggcagtgcacttttattggaacaataaatgtcatattgttttttctattattacaaaagtcatattatttgtt 45355689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 45369356 - 45369430
Alignment:
Q  42 taggcggtgcacttttattggagcaataaatgtcacattgttttttctattattac--aagtcatattatatgtt 114  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||||||| ||||    
T  45369356 taggcagtgcacttttattggaacaataaatgtcatattgttttttctattattacaaaagtcatattatttgtt 45369430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 178 - 352
Target Start/End: Complemental strand, 17901813 - 17901637
Alignment:
Q  178 gattgtttactgataagaacagtaataatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattat 277  Q
    ||||||| ||||||| ||  ||||||||| ||||||||||||||||||||||||||| ||||  ||| | ||||||||||||||||||||||||||||||    
T  17901813 gattgttcactgatatgactagtaataatatgaaataatagagaaaactgaagacacttctcttttatcgaatatgatataagggtattttgataattat 17901714  T
Q  278 at--atattttttaaaaataattccgaggaacttaaattttcaaccaaacatattttttgaacattccttagaataa 352  Q
    ||  ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||||    
T  17901713 atatatattttttaaaaataattcccaggaattcaaattatcaaccaaacatattttttgaacattccttggaataa 17901637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 18928304 - 18928201
Alignment:
Q  194 gaacagtaataatttgaaataatagagaaaactgaagacacatctccattaccaaatatgatataagggtattttgataattatatatattttttaaaaa 293  Q
    |||||||||||||||||||||||||||||  | ||  | ||| |||  ||||||| |||| |||||||||||| ||||||||||| |||| |||||||||    
T  18928304 gaacagtaataatttgaaataatagagaac-cagacaataca-ctcttttaccaactatggtataagggtattctgataattatacatatattttaaaaa 18928207  T
Q  294 taattc 299  Q
    ||||||    
T  18928206 taattc 18928201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 17901969 - 17901851
Alignment:
Q  42 taggcggtgcacttttattggagcaataaatgtcacattgttttttctattattaca--agtcatattatatgttgattgcatcaataaaagaaaacata 139  Q
    ||||| ||| |||||||||||| |||||||| ||| |||||||||||||||||||||  ||||||||||  |  |||||||||||             ||    
T  17901969 taggcagtggacttttattggaacaataaatttcatattgttttttctattattacagaagtcatattagtt--tgattgcatca-------------ta 17901885  T
Q  140 gatgaattgatgtatgaaataaaactatcaaata 173  Q
    ||||||||||||||||||||||||||||||||||    
T  17901884 gatgaattgatgtatgaaataaaactatcaaata 17901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 41213272 - 41213244
Alignment:
Q  270 ataattatatatattttttaaaaataatt 298  Q
    |||||||||||||||||||||||||||||    
T  41213272 ataattatatatattttttaaaaataatt 41213244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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