View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_18 (Length: 302)
Name: NF1957_low_18
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 37658409 - 37658218
Alignment:
| Q |
12 |
aatactgtgttcagtgtaaataaactttgaaaagtatgtatatttcattgaccgatatagcagaatcagaatcaacannnnnnnnnngtacaaagcaaag |
111 |
Q |
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| T |
37658409 |
aatactgtgttcagtgtaaataaactttgaaaagtatgtatatttcattgaccgatatagcagaatcagaatcaacattttttttt-gtacaaagcaaag |
37658311 |
T |
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| Q |
112 |
cagaatcgatatcttttatgataagaaaaaatgttatttggacaacaaaaatgttgttcaacacagtacatttatacggattgcatacaattg |
204 |
Q |
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| T |
37658310 |
cagaatcgatatcttttatgataagaaaaaatgttatttggacaacaaaaatgttgttcaacacagtacatttatacggattgcatacaattg |
37658218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 37657482 - 37657396
Alignment:
| Q |
202 |
ttgatgtttttattgtattcattttgaaaacaagacactactagtatcatttttgcacacaaaaattccttttcatgagtcctaatt |
288 |
Q |
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| T |
37657482 |
ttgatgtttttattgtattcattttgaaaacaagacactactagtatcatttttgcacacaaaaattccttttcatgagtcctaatt |
37657396 |
T |
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