View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_low_19 (Length: 300)
Name: NF1957_low_19
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 581268 - 581549
Alignment:
| Q |
28 |
attatattcataatacaagcttcatatcgtataaaagtc-------------gtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581268 |
attatattcataatacaagcttcatttcgtataaaagtcttagtaaggtcctgtttgtgacttcttactggtaatttgtttgctttgtaagagtcttatt |
581367 |
T |
|
| Q |
115 |
tggtatttctttttattattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgt |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581368 |
tggtatttctttt-attattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgt |
581466 |
T |
|
| Q |
215 |
tgtgaaatttgaagaagttattggggaggatcttgagttatctttagctaaatattttttggataattgtaagttcttggaga |
297 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581467 |
tgtgaaatttgaacaagttattggggaggatcttgagttatctttagctaaatattttttggataattgtaagttcttggaga |
581549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 297
Target Start/End: Original strand, 1207768 - 1207909
Alignment:
| Q |
156 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttat |
255 |
Q |
| |
|
|||| |||||||||||||| |||| ||| ||| ||| | ||||||||| ||||||||||||||||||||||||||||| ||| || |||| ||||||| |
|
|
| T |
1207768 |
tttgaggaagagcttttgaattcttctgttgttcccgaatgtttggcttctctccatgttgtgaaatttgaagaagttaatggagatgatcatgagttaa |
1207867 |
T |
|
| Q |
256 |
ctttagctaaatattttttggataattgtaagttcttggaga |
297 |
Q |
| |
|
||||||| ||| ||| |||| ||| ||| | ||||||||| |
|
|
| T |
1207868 |
ttttagctcaatttttggtggaaaatggtatggtcttggaga |
1207909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 1214960 - 1215140
Alignment:
| Q |
86 |
taatttgtttgctttgtaagagtcttatttggtatttctttttattattaatggttaggaaatatgtgattttggggaagagcttttgagttctgctgat |
185 |
Q |
| |
|
|||||| ||| |||| | |||||||||||||| ||| |||| || |||||| || ||| |||| | | |||| |||||| |||||||||||||| | |
|
|
| T |
1214960 |
taatttctttacttttttagagtcttatttggacttt-ttttgatgattaattgtcagggaatacctaaatttgaggaagaacttttgagttctgccgtg |
1215058 |
T |
|
| Q |
186 |
gtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttatctttagctaaat |
267 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||| ||| || ||| |||| ||| ||||||||||| |
|
|
| T |
1215059 |
gtgcccggtagtttggcttctctccatgttgtgaaatttgaagaagttaatggagacaatcatgagatatttttagctaaat |
1215140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 1201639 - 1201712
Alignment:
| Q |
161 |
ggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagtta |
234 |
Q |
| |
|
|||||||| | | |||||||||| ||||||| | ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
1201639 |
ggaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtgaaatttaaagaagtta |
1201712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 929300 - 929202
Alignment:
| Q |
174 |
agttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttatctttagctaaatatttt |
272 |
Q |
| |
|
||||| |||| ||||||| | ||||||||| |||| |||||||||||||| ||||||||||||| || |||| ||| ||| ||| ||||||| |||| |
|
|
| T |
929300 |
agttcggctgttgtgcccgaatgtttggcttctctctatgttgtgaaatttaaagaagttattggagacgatcatgatctatttttggctaaatttttt |
929202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 581184 - 581218
Alignment:
| Q |
1 |
gacacttgttctcaaggttcgtaattaattatatt |
35 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
581184 |
gacacttgttctcaaggttcgtaattacttatatt |
581218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 1214868 - 1214906
Alignment:
| Q |
28 |
attatattcataatacaagcttcatatcgtataaaagtc |
66 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1214868 |
attatattcatgatacaagcttcatatcatataaaagtc |
1214906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 8188591 - 8188450
Alignment:
| Q |
156 |
tttggggaagagcttttgagttctgctgatgtgcccaagcgtttggcttttctccatgttgtgaaatttgaagaagttattggggaggatcttgagttat |
255 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| ||| | | || |||| |||||||| |
|
|
| T |
8188591 |
tttgtggaagagcttctgagttctgctgttgtgcccgattgtttggcttctctccatgttgtgaaatttgaagaaattaatagagacgatcatgagttat |
8188492 |
T |
|
| Q |
256 |
ctttagctaaatattttttggataattgtaagttcttggaga |
297 |
Q |
| |
|
|||||||| || |||| |||| ||| ||| | ||||||||| |
|
|
| T |
8188491 |
ttttagctacattttttatggaaaatggtatgatcttggaga |
8188450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University