View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1957_low_2 (Length: 677)

Name: NF1957_low_2
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1957_low_2
NF1957_low_2
[»] chr4 (10 HSPs)
chr4 (10-491)||(45394317-45394788)
chr4 (353-486)||(2460847-2460981)
chr4 (409-486)||(34941502-34941579)
chr4 (449-486)||(52129421-52129458)
chr4 (231-382)||(5227894-5228053)
chr4 (441-492)||(6057002-6057053)
chr4 (444-487)||(51386455-51386498)
chr4 (448-489)||(42792772-42792813)
chr4 (411-487)||(24666128-24666204)
chr4 (418-474)||(24666832-24666888)
[»] chr5 (11 HSPs)
chr5 (174-493)||(40371893-40372215)
chr5 (10-178)||(40367217-40367385)
chr5 (556-663)||(43549313-43549415)
chr5 (399-495)||(24565563-24565661)
chr5 (399-495)||(24606599-24606697)
chr5 (447-486)||(39936255-39936294)
chr5 (448-488)||(27345929-27345969)
chr5 (441-496)||(39937909-39937965)
chr5 (444-486)||(29595600-29595642)
chr5 (448-485)||(8743111-8743148)
chr5 (448-488)||(23253496-23253536)
[»] chr7 (19 HSPs)
chr7 (209-463)||(43660150-43660404)
chr7 (240-486)||(30580635-30580884)
chr7 (10-182)||(30580960-30581132)
chr7 (10-182)||(43659921-43660094)
chr7 (399-487)||(36611454-36611543)
chr7 (411-487)||(41358310-41358386)
chr7 (428-496)||(46491678-46491746)
chr7 (432-486)||(41358965-41359019)
chr7 (409-486)||(9147102-9147179)
chr7 (418-486)||(767136-767204)
chr7 (450-494)||(17114137-17114181)
chr7 (419-486)||(41965758-41965825)
chr7 (428-494)||(767956-768022)
chr7 (448-486)||(3314955-3314993)
chr7 (448-486)||(3315473-3315511)
chr7 (444-474)||(30581272-30581302)
chr7 (442-488)||(42818557-42818603)
chr7 (448-484)||(10590978-10591014)
chr7 (444-488)||(25903995-25904039)
[»] chr2 (11 HSPs)
chr2 (209-488)||(20606284-20606559)
chr2 (10-186)||(40584077-40584255)
chr2 (284-482)||(40583754-40583955)
chr2 (10-182)||(20606615-20606787)
chr2 (205-256)||(40583968-40584019)
chr2 (411-483)||(23458597-23458669)
chr2 (231-475)||(38138511-38138764)
chr2 (441-487)||(127032-127078)
chr2 (442-488)||(18537497-18537543)
chr2 (448-493)||(20606931-20606976)
chr2 (441-486)||(30201991-30202036)
[»] chr6 (2 HSPs)
chr6 (411-488)||(16718967-16719044)
chr6 (414-473)||(5312254-5312313)
[»] chr1 (7 HSPs)
chr1 (418-486)||(26240851-26240919)
chr1 (448-492)||(27745550-27745594)
chr1 (448-493)||(16449548-16449593)
chr1 (448-493)||(16459122-16459167)
chr1 (442-487)||(27746162-27746207)
chr1 (444-486)||(21257923-21257965)
chr1 (449-485)||(42345867-42345903)
[»] chr8 (8 HSPs)
chr8 (411-485)||(22632323-22632397)
chr8 (435-486)||(22632965-22633016)
chr8 (442-496)||(42663267-42663321)
chr8 (441-494)||(27243438-27243491)
chr8 (441-494)||(27255013-27255066)
chr8 (441-481)||(10333634-10333674)
chr8 (414-486)||(26847097-26847169)
chr8 (449-485)||(33321498-33321534)
[»] chr3 (14 HSPs)
chr3 (414-491)||(54753572-54753649)
chr3 (441-485)||(9830573-9830617)
chr3 (441-488)||(53501-53548)
chr3 (449-492)||(9831273-9831316)
chr3 (448-487)||(20807936-20807975)
chr3 (418-488)||(14746882-14746951)
chr3 (441-487)||(48190598-48190644)
chr3 (441-486)||(15287567-15287612)
chr3 (448-485)||(54308454-54308491)
chr3 (449-497)||(2226711-2226759)
chr3 (448-488)||(4706966-4707006)
chr3 (414-474)||(29516525-29516585)
chr3 (411-475)||(31629352-31629416)
chr3 (448-488)||(33762698-33762738)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Original strand, 45394317 - 45394788
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45394317 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaatgtggattgtgaatcaat 45394416  T
Q  110 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatagaatagtcgcattgtttcaagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |    
T  45394417 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatggaacagtcgcattatttcaaat 45394516  T
Q  210 ccatatttccattgcagaccttcaattaatgcttaaagcattatgttgtagtgtgtcttggttaaaataatctatggcagcaaccatcttgtgcagaagt 309  Q
    |||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||              ||||||||||||||||    
T  45394517 ccatatttccattgcacacctttagttaatgcttaaaacattatgttgtagtgtgtcttggttaaaataa--------------catcttgtgcagaagt 45394602  T
Q  310 tttggttagaaagg---cagatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttct-atttttaattttcaacaaaatct 405  Q
    ||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45394603 tttggttagaaaggaaccggatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttctcatttttaattttcaacaaaatct 45394702  T
Q  406 aaacgttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaattt 491  Q
    ||||||||||||||||||||||||||||||||||||||||  |  |||| |||||||||||||||||||  | |||||||| ||||    
T  45394703 aaacgttaattaaatctaacgttattttattcatagtccatcgacgaggtacttaattgaaccctcaccctaaaatccacctattt 45394788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 353 - 486
Target Start/End: Complemental strand, 2460981 - 2460847
Alignment:
Q  353 tgattgtgtgtagcaaggtaaacttgttct-atttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccactggtg 451  Q
    ||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||| |  |||||||| |||||||| |||||||||| |||||||||||    
T  2460981 tgattgtgtgtagcaatataaagttgttctcatttttaattttcaacaaaatctaaccactaattaaacctaacgttgttttattcatggtccactggtg 2460882  T
Q  452 agggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||| || | |||||| |  ||||||||||    
T  2460881 agggacttagttcagccctcatcctagaatccacc 2460847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 34941579 - 34941502
Alignment:
Q  409 cgttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||| ||| |||| |||| |||||| |||||  |||||| ||||||||||||||||||||||||||  ||||||||||    
T  34941579 cgttgattcaatcaaacggtattttcttcatgatccactagtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 486
Target Start/End: Complemental strand, 52129458 - 52129421
Alignment:
Q  449 gtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  52129458 gtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 382
Target Start/End: Complemental strand, 5228053 - 5227894
Alignment:
Q  231 tcaattaatgcttaaagcattatgttg----tagtgtgtcttggttaaaataatctatggcagcaaccatcttgt-gcagaagttttggttagaaaggca 325  Q
    |||||||| |||||| ||||||||||     |||||||||||||| |||| ||| |||||  ||| |||| || | |||||| ||||||||||| ||| |    
T  5228053 tcaattaaggcttaatgcattatgtttgttttagtgtgtcttggtcaaaagaatttatggtggcagccatttttttgcagaatttttggttagagaggaa 5227954  T
Q  326 ---gatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttct 382  Q
       |||||||| |||||| ||||||| || ||||||||||||| ||  |||| |||||||    
T  5227953 tgtgatggggacgagaaacggaaagggacatgattgtgtgtagaaatctaaaattgttct 5227894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 6057002 - 6057053
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccaccaatttt 492  Q
    |||||| ||||||||||||| | |||||||||||  ||||||||||||||||    
T  6057002 gtccaccggtgagggacttagtagaaccctcaccctagaatccaccaatttt 6057053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 487
Target Start/End: Complemental strand, 51386498 - 51386455
Alignment:
Q  444 cactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    |||||||||||||||||||||||||||||||  | |||||||||    
T  51386498 cactggtgagggacttaattgaaccctcaccctaaaatccacca 51386455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 42792813 - 42792772
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaat 489  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  42792813 ggtgagggacttaattggaccctcaccctagaatccaccaat 42792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 487
Target Start/End: Complemental strand, 24666204 - 24666128
Alignment:
Q  411 ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    ||||||| ||| || | ||||||  |||| || ||| |||||||||||||||||| ||||||||  |||||||||||    
T  24666204 ttaattagatcgaatggtatttttgtcatggttcaccggtgagggacttaattgatccctcaccctagaatccacca 24666128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 24666832 - 24666888
Alignment:
Q  418 aatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacc 474  Q
    |||| |||| |||||| ||||| ||||||  | ||||||||||||||||||||||||    
T  24666832 aatcaaacggtatttttttcatggtccaccagggagggacttaattgaaccctcacc 24666888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 174 - 493
Target Start/End: Original strand, 40371893 - 40372215
Alignment:
Q  174 agaagaaacatatagaatagtcgcattgtttcaagtccatatttccattgcagaccttcaattaatgcttaaagcattatgttgtagtgtgtcttggtta 273  Q
    ||||||||||||| ||| | ||||||| ||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||    
T  40371893 agaagaaacatatggaacaatcgcattatttcaagtccatatt-ccattacacaccttcagttaatgcttaaagcattatgttgtagtgtgtcttggtta 40371991  T
Q  274 aaataatctatggcagcaaccatcttgtgcagaagttttggttagaaagg---cagatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaagg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||    
T  40371992 aaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggaaccagatggggaagagaaaaggaaaggaacgtgattttgtgtagcaagg 40372091  T
Q  371 taaacttgttct-atttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccc 469  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  40372092 taaacttgttctcatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccaccggtgaggaacttaattgaaccc 40372191  T
Q  470 tcacctaagaatccaccaattttt 493  Q
    |||||  |||||||||||||||||    
T  40372192 tcaccctagaatccaccaattttt 40372215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 40367217 - 40367385
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40367217 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaat 40367316  T
Q  110 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaag 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40367317 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaag 40367385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 556 - 663
Target Start/End: Original strand, 43549313 - 43549415
Alignment:
Q  556 cataacctcttttaccatagcctagccatgcacatttttatacccatttttgttgacataaagttgctttcattctatgtatctttatttatttttatta 655  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43549313 cataacctcttttaccatagc-----catgcacatttttatacccatttttgttgacataaagttgctttcattctatgtatctttatttatttttatta 43549407  T
Q  656 gttcttta 663  Q
    ||||||||    
T  43549408 gttcttta 43549415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 495
Target Start/End: Complemental strand, 24565661 - 24565563
Alignment:
Q  399 aaaatctaaacg-ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc-aatttttaa 495  Q
    |||||||||||  |||||||||||||| | |||||| ||||| |||||| ||||||||| |||||||||||||||||  |||||||||| |||||||||    
T  24565661 aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccaccgaatttttaa 24565563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 495
Target Start/End: Complemental strand, 24606697 - 24606599
Alignment:
Q  399 aaaatctaaacg-ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc-aatttttaa 495  Q
    |||||||||||  |||||||||||||| | |||||| ||||| |||||| ||||||||| |||||||||||||||||  |||||||||| |||||||||    
T  24606697 aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccaccgaatttttaa 24606599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 486
Target Start/End: Complemental strand, 39936294 - 39936255
Alignment:
Q  447 tggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  39936294 tggtgagggacttaattgaaccctcaccttagaatccacc 39936255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 488
Target Start/End: Original strand, 27345929 - 27345969
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  27345929 ggtgagggacttaattgaaccctcaccctagaatccaccaa 27345969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 39937909 - 39937965
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccacca-atttttaaa 496  Q
    |||||| |||||||||||||| ||||||||||||  ||||||||||| |||||||||    
T  39937909 gtccaccggtgagggacttaactgaaccctcaccctagaatccaccatatttttaaa 39937965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 486
Target Start/End: Original strand, 29595600 - 29595642
Alignment:
Q  444 cactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  29595600 cactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 8743111 - 8743148
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccac 485  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  8743111 ggtgagggacttaattgaaccttcaccttagaatccac 8743148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 488
Target Start/End: Original strand, 23253496 - 23253536
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  23253496 ggtgagggacttaattggaccctcaccctagaatccaccaa 23253536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 5e-64; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 209 - 463
Target Start/End: Original strand, 43660150 - 43660404
Alignment:
Q  209 tccatatttccattgcagaccttcaattaatgcttaaagcattat---gttgtagtgtgtcttggttaaaataatctatggcagcaaccatcttgtgcag 305  Q
    ||||||||||||||||| |||||| ||||| ||||||| ||||||   ||| |||||||||  ||||| ||||||||||| ||| |||||||||||||||    
T  43660150 tccatatttccattgcacaccttctattaaggcttaaatcattattatgttttagtgtgtcgaggttagaataatctatgacagaaaccatcttgtgcag 43660249  T
Q  306 aagttttggttagaaaggcagatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttctatttttaattttcaacaaaatct 405  Q
    || |||||||||||||||   |  ||||||||||||||||| | |||| |||||||||| ||| ||||| ||||||||||||| ||||| ||||||||||    
T  43660250 aa-ttttggttagaaagg--aactgggaagagaaaaggaaaaggacgtaattgtgtgtaccaatgtaaagttgttctattttttatttttaacaaaatct 43660346  T
Q  406 aaacgttaattaaatctaacgttattttattcatagtccactggtgagggacttaatt 463  Q
    || | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  43660347 aaccattaattaaatctaacgttattttattcatggtccaccggtgagggacttaatt 43660404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 240 - 486
Target Start/End: Complemental strand, 30580884 - 30580635
Alignment:
Q  240 gcttaaagcattatgttgtagtgtgtcttggttaaaataatctatggcagcaaccatcttgtgcagaagttttggttagaaaggcagatggggaagagaa 339  Q
    ||||||| ||||||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |     |||||||||    
T  30580884 gcttaaatcattatgttttagtgtgtcgaggttagaataatctatggcagcaaccatcttgtgcagaa-ttttggttagaaaggaact---ggaagagaa 30580789  T
Q  340 aaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttct-atttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattca 438  Q
    ||||||| | |||| ||||||||||||||  |||| ||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  30580788 aaggaaaaggacgtaattgtgtgtagcaatataaagttgttctcattttttatttttaacaaaatctaaccattaattaaatctaacgttattttattca 30580689  T
Q  439 tagtccac------tggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||       |||||| ||||||||| ||||||||||  ||||||||||    
T  30580688 tagtccaccggtaacggtgagagacttaattaaaccctcaccctagaatccacc 30580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 30581132 - 30580960
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaatcaaggtggattgtgaatcaa 108  Q
    |||||||||||||||||||||||||| || | ||  ||||||||||| ||||| | |||||||||||||||||||  |||||||| || |  ||||||||    
T  30581132 attattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataatcaagg-gggtcatgaatcaa 30581034  T
Q  109 ttttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac 182  Q
    |||||| ||||||||    ||| |  |||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  30581033 ttttgtagagaggggaacatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 30580960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 43659921 - 43660094
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca--ttatgcattgaatttgaatgaaatcaaggtggattgtgaatca 107  Q
    |||||||||||||||||||||||||| || | ||  ||||||||||||||||| |  |||||||||||||||||||  |||||||| |  |  |||||||    
T  43659921 attattctcattgaaattatgaagatgaagggtttatttttaaattatcaaattattttatgcattgaatttgaatataatcaagg-gagtcatgaatca 43660019  T
Q  108 attttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac 182  Q
    ||||||| ||||||||    ||| |  |||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  43660020 attttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 43660094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 399 - 487
Target Start/End: Original strand, 36611454 - 36611543
Alignment:
Q  399 aaaatctaaacg-ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    |||||||||||  |||||||||||||| | |||||| ||||| |||||| |||||| || |||||||||||||||||  |||||||||||    
T  36611454 aaaatctaaaccattaattaaatctaatggtattttgttcatggtccaccggtgagagatttaattgaaccctcaccctagaatccacca 36611543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 487
Target Start/End: Complemental strand, 41358386 - 41358310
Alignment:
Q  411 ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    |||||| |||| |||  |||||||||||| |||||  |||||||||||||||||| |||||| | ||||||||||||    
T  41358386 ttaatttaatccaaccatattttattcatggtccatcggtgagggacttaattgatccctcatccaagaatccacca 41358310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 46491678 - 46491746
Alignment:
Q  428 tattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaatttttaaa 496  Q
    |||||| || ||||||||| ||||||||||||| |||||||||||||  ||||||||||  ||||||||    
T  46491678 tatttttttgatagtccaccggtgagggacttagttgaaccctcaccctagaatccacctgtttttaaa 46491746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 432 - 486
Target Start/End: Original strand, 41358965 - 41359019
Alignment:
Q  432 ttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||||| |||||||||||| |||||||||||| ||||||||  ||||||||||    
T  41358965 ttattcatggtccactggtgatggacttaattgatccctcaccctagaatccacc 41359019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 9147179 - 9147102
Alignment:
Q  409 cgttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||||||||||||| | |||||| |||||  |||||  ||||||||| || ||||||||||| || ||||||||||    
T  9147179 cgttaattaaatctaagggtattttgttcatgttccaccagtgagggacctagttgaaccctcatcttagaatccacc 9147102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 767204 - 767136
Alignment:
Q  418 aatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||| | |||| |||||  ||||| ||||||||||||||||| |||||||||  ||||||||||    
T  767204 aatctaacggtgtttttttcatgatccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 17114181 - 17114137
Alignment:
Q  450 tgagggacttaattgaaccctcacctaagaatccaccaattttta 494  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||    
T  17114181 tgagggacttaattgaaccctcaccctagaatccaccatttttta 17114137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 41965758 - 41965825
Alignment:
Q  419 atctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||||| |||||  ||| | |||||| ||||||||||||||||| |||||||||  ||||||||||    
T  41965758 atctaacggtatttccttcgtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 494
Target Start/End: Original strand, 767956 - 768022
Alignment:
Q  428 tattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaattttta 494  Q
    |||||| ||| | |||||| ||||||||||||||||| |||||||||  | |||||||||| |||||    
T  767956 tatttttttcgtggtccaccggtgagggacttaattggaccctcaccctaaaatccaccaaatttta 768022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 3314993 - 3314955
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  3314993 ggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 3315473 - 3315511
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  3315473 ggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 474
Target Start/End: Original strand, 30581272 - 30581302
Alignment:
Q  444 cactggtgagggacttaattgaaccctcacc 474  Q
    |||||||||||||||||||||||||||||||    
T  30581272 cactggtgagggacttaattgaaccctcacc 30581302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 42818557 - 42818603
Alignment:
Q  442 tccactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||| |||||||||||||||||||||||||||  ||||| ||||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcaccaa 42818603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 10590978 - 10591014
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatcca 484  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  10590978 ggtgagggagttaattgaaccctcaccttagaatcca 10591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 25904039 - 25903995
Alignment:
Q  444 cactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||||||||||||||||||||  | |||||| ||||||||||||    
T  25904039 cactggtgagggacttaattgattcttcaccttagaatccaccaa 25903995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 209 - 488
Target Start/End: Complemental strand, 20606559 - 20606284
Alignment:
Q  209 tccatatttccattgcagaccttcaattaatgcttaaagcattatgttgtagtgtgtcttggttaaaataatctatggcagcaaccatcttgtgcagaag 308  Q
    ||||||||||||||||| |||||| ||||  ||||||| ||||||||| |||||||||  ||||| ||||| ||||||||| |||||| ||||||||||     
T  20606559 tccatatttccattgcacaccttcgattatggcttaaatcattatgttttagtgtgtcgaggttagaataagctatggcagaaaccat-ttgtgcagaa- 20606462  T
Q  309 ttttggttagaaaggcagatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttct-atttttaattttcaacaaaatctaa 407  Q
    ||||||||||||||| |     |||||||||||||||| | | || |||||||||||||| ||||| ||||||| |||||| ||||| ||||||||||||    
T  20606461 ttttggttagaaaggaact---ggaagagaaaaggaaaaggatgtaattgtgtgtagcaatgtaaagttgttctcattttttatttttaacaaaatctaa 20606365  T
Q  408 acgttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
     | |||||||||||||||||||||||||||| ||||||  |||||||||||||||| ||||||||||  | ||||||||||    
T  20606364 ccattaattaaatctaacgttattttattcacagtccatcggtgagggacttaattaaaccctcaccctaaaatccaccaa 20606284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 40584255 - 40584077
Alignment:
Q  10 attattctcattgaaattatgaagat-aaaagtttattttttaaattatcaaatcatt-atgcattgaatttgaatgaaatcaaggtggattgtgaatca 107  Q
    |||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||| |  |||||||    
T  40584255 attattcttattgaaattatgaagatgaaaaatttatttttaaaattatcaaatcatttatgcaatgaatttgaatgaaatcatggtgggtcatgaatca 40584156  T
Q  108 attttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatat 186  Q
    |||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  40584155 attttgttgagacgagtggttacttacaacaaattgtaactcaaatttgcttaaccaaacatggtgaggagaaagatat 40584077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 284 - 482
Target Start/End: Complemental strand, 40583955 - 40583754
Alignment:
Q  284 tggcagcaaccatcttgtgcagaagttttggttagaaagg---cagatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgtt 380  Q
    |||| ||| ||||||||||||||| |||||||||||||||   || |||||||||||||||||||||  |||||||||| |||||||| ||||| |||||    
T  40583955 tggccgcagccatcttgtgcagaatttttggttagaaaggaatcatatggggaagagaaaaggaaagcgacgtgattgtatgtagcaacgtaaagttgtt 40583856  T
Q  381 ctatttttaattttcaacaaaatctaaacgttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaa 480  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||  |||||  | ||| |||||||||| ||||||||| | ||||    
T  40583855 ctatttttatttttcaacaaaatctaaccgttaattaaatctaatgttattttattcacggtccatcgatgaaggacttaattcaaccctcactttagaa 40583756  T
Q  481 tc 482  Q
    ||    
T  40583755 tc 40583754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 20606787 - 20606615
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaatcaaggtggattgtgaatcaa 108  Q
    |||||||||||||||||||||||||| || | ||  ||||||||||| ||||| | |||||||||||||||||||  |||||||| || |  ||||||||    
T  20606787 attattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataatcaagg-gggtcatgaatcaa 20606689  T
Q  109 ttttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac 182  Q
    |||||| ||||||||    ||| |  |||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  20606688 ttttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 20606615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 40584019 - 40583968
Alignment:
Q  205 caagtccatatttccattgcagaccttcaattaatgcttaaagcattatgtt 256  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  40584019 caagtccatatttccattgcacaccttcaattatcgcttaaagcattatgtt 40583968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 483
Target Start/End: Original strand, 23458597 - 23458669
Alignment:
Q  411 ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatcc 483  Q
    ||||||||||| ||||||||||| || || ||| || |||||||||||||||| ||||||||||  |||||||    
T  23458597 ttaattaaatccaacgttatttttttaatggtctaccggtgagggacttaattaaaccctcaccgtagaatcc 23458669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 475
Target Start/End: Original strand, 38138511 - 38138764
Alignment:
Q  231 tcaattaatgcttaaagcattatgttg----tagtgtgtcttggttaaaataatctatggcagcaaccatcttgtg--cagaagttttggttagaaaggc 324  Q
    |||||||| |||||||||||||||||     |||||||||||||| |||| ||| |||||  ||| | || || |   ||||| ||||||||||| |||     
T  38138511 tcaattaaggcttaaagcattatgtttgttttagtgtgtcttggtcaaaagaatttatggtggcagctatttttttttcagaatttttggttagagagga 38138610  T
Q  325 a---gatggggaagagaaaaggaaaggaacgtgattgtgtgtagcaaggtaaacttgttctatttttaattttcaacaaaatctaaacg-ttaattaaat 420  Q
    |   |||||||| |||||| ||||||| || ||||||||||||| ||  |||| ||||| |  ||||  |||| ||  |||||| |||  ||||||||||    
T  38138611 atccgatggggaggagaaacggaaagggacatgattgtgtgtagaaatctaaagttgtttttatttttgtttt-aagtaaatctgaaccattaattaaat 38138709  T
Q  421 ctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacct 475  Q
    | || | ||||||||||||  |||||  |||||||||||||||||| ||||||||    
T  38138710 caaatggtattttattcatgatccaccagtgagggacttaattgaatcctcacct 38138764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 127078 - 127032
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    |||||||| ||||||||||| |||||||||||||  |||||||||||    
T  127078 gtccactgatgagggacttagttgaaccctcaccctagaatccacca 127032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 18537497 - 18537543
Alignment:
Q  442 tccactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||| ||||||||||||||||||||||||| |  ||||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccaccaa 18537543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 493
Target Start/End: Original strand, 20606931 - 20606976
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaattttt 493  Q
    |||||||||||||||||||||||||||  ||||| |||| ||||||    
T  20606931 ggtgagggacttaattgaaccctcaccctagaattcacctattttt 20606976  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 30201991 - 30202036
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||| |||||||||||||||||  ||||||||| ||||||||||    
T  30201991 gtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 16718967 - 16719044
Alignment:
Q  411 ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    |||||||||||||||| |||||| ||||| |||||| |||||||||||||||||| || |||||  ||||||||||||    
T  16718967 ttaattaaatctaacgatattttgttcatggtccaccggtgagggacttaattgatccgtcaccctagaatccaccaa 16719044  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 5312313 - 5312254
Alignment:
Q  414 attaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcac 473  Q
    |||||||| |||||||||||  | || | |||||||||||||||||||||||||||||||    
T  5312313 attaaatccaacgttatttttctaatggaccactggtgagggacttaattgaaccctcac 5312254  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 26240851 - 26240919
Alignment:
Q  418 aatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||| |||| |||||| ||||| |||||| |||||||||||||||||||||||||||  ||||||||||    
T  26240851 aatcaaacggtattttcttcatggtccaccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 27745594 - 27745550
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaatttt 492  Q
    |||||||||||||||||||||||||||| |||||||||| |||||    
T  27745594 ggtgagggacttaattgaaccctcaccttagaatccacctatttt 27745550  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 16449593 - 16449548
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaattttt 493  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  16449593 ggtgagggacttaattgaaccctcaccctagaatccaccatttttt 16449548  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 16459167 - 16459122
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaattttt 493  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  16459167 ggtgagggacttaattgaaccctcaccctagaatccaccatttttt 16459122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 487
Target Start/End: Original strand, 27746162 - 27746207
Alignment:
Q  442 tccactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    ||||||||||||||||||||||||||||||||   |||||||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccacca 27746207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 486
Target Start/End: Original strand, 21257923 - 21257965
Alignment:
Q  444 cactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||    
T  21257923 cactggtgaggaacttaattgaaccctcaccttagaatgcacc 21257965  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 449 - 485
Target Start/End: Original strand, 42345867 - 42345903
Alignment:
Q  449 gtgagggacttaattgaaccctcacctaagaatccac 485  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  42345867 gtgagggacttaattgaaccctcaccttagaagccac 42345903  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 22632397 - 22632323
Alignment:
Q  411 ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccac 485  Q
    |||||||||||||||| | || | ||||| |||||| |||||||||||||||||| ||||||||  |||||||||    
T  22632397 ttaattaaatctaacggttttattttcatggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 22632965 - 22633016
Alignment:
Q  435 ttcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||| |||||| |||||||||||||||||| ||||||||  ||||||||||    
T  22632965 ttcatggtccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 42663321 - 42663267
Alignment:
Q  442 tccactggtgagggacttaattgaaccctcacctaagaatccaccaatttttaaa 496  Q
    ||||| |||||| |||||||||| || ||||||  ||||||||||||||||||||    
T  42663321 tccaccggtgagagacttaattggactctcaccctagaatccaccaatttttaaa 42663267  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 27243491 - 27243438
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccaccaattttta 494  Q
    |||||| |||||||||||||||||| ||||| ||| | ||||||||| ||||||    
T  27243491 gtccaccggtgagggacttaattgatccctcgccttataatccaccatttttta 27243438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Complemental strand, 27255066 - 27255013
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccaccaattttta 494  Q
    |||||| |||||||||||||||||| ||||| ||| | ||||||||| ||||||    
T  27255066 gtccaccggtgagggacttaattgatccctcgccttataatccaccatttttta 27255013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 441 - 481
Target Start/End: Original strand, 10333634 - 10333674
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaat 481  Q
    ||||||||||||||||| |||||| |||||||||| |||||    
T  10333634 gtccactggtgagggacctaattggaccctcaccttagaat 10333674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 486
Target Start/End: Complemental strand, 26847169 - 26847097
Alignment:
Q  414 attaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    ||||||||||| | |||||| | | | || ||| ||||||||||||||||| |||||||||  ||||||||||    
T  26847169 attaaatctaatggtattttttccgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 449 - 485
Target Start/End: Complemental strand, 33321534 - 33321498
Alignment:
Q  449 gtgagggacttaattgaaccctcacctaagaatccac 485  Q
    |||||||||||||||||||| |||||| |||||||||    
T  33321534 gtgagggacttaattgaaccatcaccttagaatccac 33321498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 54753649 - 54753572
Alignment:
Q  414 attaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaattt 491  Q
    |||||||| |||||||||||  | ||   ||||||||||||||||||||||||||||||||  ||||| |||| ||||    
T  54753649 attaaatccaacgttatttttctaatgaaccactggtgagggacttaattgaaccctcaccgtagaattcacctattt 54753572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 9830617 - 9830573
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccac 485  Q
    |||||| |||||||||||||||||||||||||||  |||||||||    
T  9830617 gtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 53548 - 53501
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  53548 gtccactggtgagggacttgattgaactctcaccatagaatccaccaa 53501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 492
Target Start/End: Original strand, 9831273 - 9831316
Alignment:
Q  449 gtgagggacttaattgaaccctcacctaagaatccaccaatttt 492  Q
    |||||||||||||||| |||||||||  ||||||||||||||||    
T  9831273 gtgagggacttaattggaccctcaccccagaatccaccaatttt 9831316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 487
Target Start/End: Complemental strand, 20807975 - 20807936
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  20807975 ggtgagggacttaattgaaccctcaccctagaatccacca 20807936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 14746882 - 14746951
Alignment:
Q  418 aatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||||||| | |||| ||| | |||||| | ||||||||||||||| |||||||||| ||||||||||||    
T  14746882 aatctaacggtgtttttttcgtggtccaccgatgagggacttaattggaccctcacct-agaatccaccaa 14746951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 48190598 - 48190644
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccacca 487  Q
    ||||||||||||||||||| |||||||  |||||| |||||||||||    
T  48190598 gtccactggtgagggacttgattgaactttcaccttagaatccacca 48190644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 15287612 - 15287567
Alignment:
Q  441 gtccactggtgagggacttaattgaaccctcacctaagaatccacc 486  Q
    |||||| ||||||||||||||||| |||||||||  ||||||||||    
T  15287612 gtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 54308491 - 54308454
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccac 485  Q
    |||||||||||||||||||||||||||  |||||||||    
T  54308491 ggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 449 - 497
Target Start/End: Original strand, 2226711 - 2226759
Alignment:
Q  449 gtgagggacttaattgaaccctcacctaagaatccaccaatttttaaat 497  Q
    |||||||| |||||||||||||||||  |||||||| || |||||||||    
T  2226711 gtgagggaattaattgaaccctcaccctagaatccatcattttttaaat 2226759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 488
Target Start/End: Original strand, 4706966 - 4707006
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  4706966 ggtgagggacttaatagaaccctcaccctagaatccaccaa 4707006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 29516525 - 29516585
Alignment:
Q  414 attaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacc 474  Q
    |||||||| ||| |||||||  | || | |||| |||||||||||||||||||||||||||    
T  29516525 attaaatccaacattatttttctaatggaccaccggtgagggacttaattgaaccctcacc 29516585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Complemental strand, 31629416 - 31629352
Alignment:
Q  411 ttaattaaatctaacgttattttattcatagtccactggtgagggacttaattgaaccctcacct 475  Q
    ||||||||||  || | |||||| |||||  ||||||||||||| |||||||||||| |||||||    
T  31629416 ttaattaaattcaatggtattttgttcatgatccactggtgaggaacttaattgaacactcacct 31629352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 488
Target Start/End: Original strand, 33762698 - 33762738
Alignment:
Q  448 ggtgagggacttaattgaaccctcacctaagaatccaccaa 488  Q
    ||||||||||||||| |||||||||||| |||||| |||||    
T  33762698 ggtgagggacttaatagaaccctcaccttagaatctaccaa 33762738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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