View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1957_low_21 (Length: 296)

Name: NF1957_low_21
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1957_low_21
NF1957_low_21
[»] chr3 (29 HSPs)
chr3 (1-280)||(19853650-19853929)
chr3 (8-270)||(19943864-19944142)
chr3 (15-280)||(24839674-24839954)
chr3 (53-188)||(26653400-26653535)
chr3 (212-280)||(19858210-19858278)
chr3 (57-166)||(19989795-19989904)
chr3 (53-185)||(26647255-26647387)
chr3 (53-166)||(20015933-20016046)
chr3 (53-186)||(20036335-20036468)
chr3 (102-186)||(19832122-19832206)
chr3 (53-165)||(19858343-19858455)
chr3 (53-160)||(17114992-17115099)
chr3 (102-185)||(19838647-19838730)
chr3 (226-280)||(19971749-19971803)
chr3 (102-166)||(19956357-19956421)
chr3 (103-166)||(19812550-19812613)
chr3 (105-165)||(19849264-19849324)
chr3 (212-268)||(26647151-26647207)
chr3 (212-270)||(19812425-19812483)
chr3 (212-270)||(20016113-20016171)
chr3 (53-166)||(19951394-19951507)
chr3 (212-280)||(19818692-19818760)
chr3 (212-268)||(20046270-20046326)
chr3 (106-188)||(19818805-19818887)
chr3 (126-164)||(20046395-20046433)
chr3 (216-280)||(19838531-19838595)
chr3 (216-280)||(19956222-19956286)
chr3 (212-280)||(26653287-26653355)
chr3 (111-163)||(30914919-30914971)
[»] chr8 (3 HSPs)
chr8 (59-280)||(22689414-22689635)
chr8 (8-168)||(11544341-11544498)
chr8 (212-280)||(22651805-22651873)
[»] chr5 (4 HSPs)
chr5 (53-185)||(9815288-9815420)
chr5 (58-185)||(26354664-26354791)
chr5 (212-280)||(9815172-9815240)
chr5 (212-280)||(26354839-26354907)
[»] chr4 (1 HSPs)
chr4 (87-163)||(6398537-6398613)
[»] chr1 (1 HSPs)
chr1 (212-280)||(1717349-1717417)
[»] chr7 (2 HSPs)
chr7 (53-163)||(12497482-12497591)
chr7 (53-163)||(12521347-12521456)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 19853929 - 19853650
Alignment:
Q  1 ttgttgatgaatcaaatgccaacctcacatggttaattttcaagggcgcttcaaccttatgccacctcaacaatacatggtcttcattgttgatcaactt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19853929 ttgttgatgaatctaatgccaacctcacatggttaattttcaagggcgcttcaaccttatgccacctcaacaatacatggtctccattgttgatcaactt 19853830  T
Q  101 cggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgcagattaacatcaaaaggaaattttttgaaatca 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19853829 cggttgtggctgcaaatttatgaatctctcccacacccaagcttgtaccaagtaaaagggtgattgcagattaacatcaagaggaaattttttgaaatca 19853730  T
Q  201 acaannnnnnncttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19853729 acaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctct 19853650  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 19944142 - 19943864
Alignment:
Q  8 tgaatcaaatgccaacctcacatggttaattttcaagggcgcttcaaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgt 107  Q
    |||||| |||||||||| ||||| || ||||||||||| |   | ||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  19944142 tgaatctaatgccaaccccacattgtcaattttcaaggcc---ttaacattatgccacctcaacaatacatggtctccattattgatcaactttggttgt 19944046  T
Q  108 ggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgcagattaacatcaaa-------------------aggaaat 188  Q
    |||||||||||| |||| || ||||| ||||||||||| |||| ||||||||||||||| | |||||| || ||                   |||| ||    
T  19944045 ggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccaacataaagggaaaatttatcaggacat 19943946  T
Q  189 tttttgaaatcaacaannnnnnncttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatag 270  Q
    ||||| ||||||||||       |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  19943945 tttttcaaatcaacaatttgtttcttaaacaaactcaaatccttatataagctagccaaaacagcaggtgccaaagccatag 19943864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 24839674 - 24839954
Alignment:
Q  15 aatgccaacctcacatggttaattttcaagggcgcttcaaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgca 114  Q
    |||||||||||||||| || ||||||||||| |   | ||| |||||||||||||||||||||||||||  ||| |||  |||||| |||||||||||||    
T  24839674 aatgccaacctcacattgtcaattttcaaggcc---ttaacattatgccacctcaacaatacatggtctcgattattgcccaacttgggttgtggctgca 24839770  T
Q  115 aatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgcagattaacatc------aaa------------aggaaattttttgaa 196  Q
    ||||| |||| || ||||| ||||||||||| |||| ||||||||||||||| | |||||| ||      |||            |||||||||||||||    
T  24839771 aatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattgtacattaacgtccagcataaagggaaatttatcaggaaattttttgaa 24839870  T
Q  197 atcaacaannnnnnncttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    ||||||||       ||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  24839871 atcaacaattgtgttcttaaacaaccttaaatcgttatataagctagccaaaacagcaggtgccaaagaaataggattccctct 24839954  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 26653535 - 26653400
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||||||||||  |||||||||| | ||||||||||| |||||||| ||||||||| |||| |||||||||||||||| ||| ||||||    
T  26653535 aaccttatgccacctcaacaatgaatggtcttcactattgatcaacttgggttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaag 26653436  T
Q  153 taaaagggtgattgcagattaacatcaaaaggaaat 188  Q
    |||||||||||| | |||||||| || |||||||||    
T  26653435 taaaagggtgatcgtagattaacttccaaaggaaat 26653400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 19858278 - 19858210
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  19858278 cttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctct 19858210  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 19989904 - 19989795
Alignment:
Q  57 ttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaa 156  Q
    ||||||||||| ||||| | | ||||||||| |||||||| | | |||||||| || |||||| |||| |||||||| ||||||||||| ||||||||||    
T  19989904 ttatgccacctaaacaaaaaagggtcttcatagttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa 19989805  T
Q  157 agggtgattg 166  Q
    ||||||||||    
T  19989804 agggtgattg 19989795  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 26647387 - 26647255
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||| ||||| | | ||||| | | ||||||||| || |||||||| || |||||| |||| || ||||||||||||| ||| ||||||    
T  26647387 aaccttatgccacctaaacaacaaagggtctccttggttgatcaaattgggttgtggttgtaaatttttgaacctttcccacacccaaatttgaaccaag 26647288  T
Q  153 taaaagggtgattgcagattaacatcaaaagga 185  Q
    |||||||||||||| ||| |||| || ||||||    
T  26647287 taaaagggtgattgaagagtaacttccaaagga 26647255  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 20015933 - 20016046
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||| ||||||| | |||||||||  ||||||||| | |||||||| || ||| || |||| |||||||||||||||| ||| |||||     
T  20015933 aaccttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttgtggttgtaaaattttgaacctctcccacacccaaatttgaaccaaa 20016032  T
Q  153 taaaagggtgattg 166  Q
    |||| |||||||||    
T  20016033 taaatgggtgattg 20016046  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 20036335 - 20036468
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||| ||||| | | ||||  ||| ||| | |||| | |||||||| || |||||| |||| |||||||||||||||| ||| ||||||    
T  20036335 aaccttatgccacctaaacaaaaaagggtccccatggttcaacaacatgggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaag 20036434  T
Q  153 taaaagggtgattgcagattaacatcaaaaggaa 186  Q
    |||||||||||||  ||| |||| || |||||||    
T  20036435 taaaagggtgattcaagagtaacttctaaaggaa 20036468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 19832206 - 19832122
Alignment:
Q  102 ggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgcagattaacatcaaaaggaa 186  Q
    |||||||| || |||||| |||| |||||||||||||||| ||| |||||||||||||||||||| ||| |||| || |||||||    
T  19832206 ggttgtggatgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggaa 19832122  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 19858455 - 19858343
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||| ||||||| | | ||| |||  ||||||||| | ||||||||||  |||||| |||| || ||||| ||||||||||| | ||||    
T  19858455 aaccttatgccacctaaacaataaaggttctccatgcttgatcaacatgggttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaag 19858356  T
Q  153 taaaagggtgatt 165  Q
    |||||||||||||    
T  19858355 taaaagggtgatt 19858343  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 17115099 - 17114992
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    |||| |||||||||| ||||||| | ||||| ||| |||||||||| | | |||||| || |||||| |||| |||||||||| ||||| ||| ||||||    
T  17115099 aaccctatgccacctaaacaataaagggtctccatggttgatcaacatggattgtggttgtaaatttttgaacctctcccacatccaaatttgaaccaag 17115000  T
Q  153 taaaaggg 160  Q
    ||||||||    
T  17114999 taaaaggg 17114992  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 19838730 - 19838647
Alignment:
Q  102 ggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgcagattaacatcaaaagga 185  Q
    |||||||| || |||||| |||| |||||||||||||||| ||| |||||||||||||||||||| ||| |||| || ||||||    
T  19838730 ggttgtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaagga 19838647  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 19971803 - 19971749
Alignment:
Q  226 aatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  19971803 aatccttatataagctagccaaaacagttggtgccaaagcaatagtattgcctct 19971749  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 19956421 - 19956357
Alignment:
Q  102 ggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattg 166  Q
    ||||||||||| |||||| |||| || ||||||||||||| ||| ||||||||||||||||||||    
T  19956421 ggttgtggctgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattg 19956357  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 19812613 - 19812550
Alignment:
Q  103 gttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattg 166  Q
    ||||||| ||||||||| |||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  19812613 gttgtggttgcaaatttttgaacctctcccaaacccaaatttgaaccaagtaaaagggtgattg 19812550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 19849324 - 19849264
Alignment:
Q  105 tgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgatt 165  Q
    ||||| ||||||||| |||| |||||||||||||||| ||| ||||| |||||||||||||    
T  19849324 tgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatt 19849264  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 26647207 - 26647151
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaat 268  Q
    |||||||||||| ||||| |||||||||||||| |||||||  ||||||||||||||    
T  26647207 cttaaacaaacttaaatccttatataagctagctaaaacagccggtgccaaagcaat 26647151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 19812483 - 19812425
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatag 270  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||  ||||||||||||||||    
T  19812483 cttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaatag 19812425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 20016113 - 20016171
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatag 270  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||  ||||||||||||||||    
T  20016113 cttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaatag 20016171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 19951507 - 19951394
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||| ||||| | | ||||| ||| ||| |||  | | |||||||| || |||||| | || |||||||| | ||||| ||| ||||||    
T  19951507 aaccttatgccacctaaacaaaaaagggtctccatggtttatcggcatgggttgtggttgtaaatttttaaacctctcccaaatccaaatttgaaccaag 19951408  T
Q  153 taaaagggtgattg 166  Q
    ||||||||||||||    
T  19951407 taaaagggtgattg 19951394  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 19818760 - 19818692
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||||||||| ||||| ||||| | | ||||||||||||  |||||||||||||||| ||| |||||    
T  19818760 cttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaataggattccctct 19818692  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 20046326 - 20046270
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaat 268  Q
    |||||| ||||| ||||| ||||||| |||| ||||||||| |||||||||||||||    
T  20046326 cttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaat 20046270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 19818887 - 19818805
Alignment:
Q  106 gtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgcagattaacatcaaaaggaaat 188  Q
    |||| |||| |||| |||| |||||||||||||| | ||| ||||| |||||||||||||| ||| |||  || |||||||||    
T  19818887 gtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattgaagagtaagttctaaaggaaat 19818805  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 20046433 - 20046395
Alignment:
Q  126 ctctcccacacccaaacttgtaccaagtaaaagggtgat 164  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  20046433 ctctcccacacccaaacttgaaccaaataaaagggtgat 20046395  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 19838595 - 19838531
Alignment:
Q  216 aacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||| | ||||| ||||||| |||||| |||||||  |||||||||||||||| ||| |||||    
T  19838595 aacaaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaatagaatttcctct 19838531  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 19956286 - 19956222
Alignment:
Q  216 aacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||| | ||||| ||||||| |||||| |||||||  |||||||||||||||| ||| |||||    
T  19956286 aacaaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaataggatttcctct 19956222  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 26653355 - 26653287
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||||||| |||| || |||||||  ||||| |||||||  |||||||||||||||| ||| |||||    
T  26653355 cttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaataggatttcctct 26653287  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 30914971 - 30914919
Alignment:
Q  111 tgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtga 163  Q
    ||||||||| | || |||||||| ||||||| ||||||||||| |||||||||    
T  30914971 tgcaaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtga 30914919  T

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Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 59 - 280
Target Start/End: Original strand, 22689414 - 22689635
Alignment:
Q  59 atgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaag 158  Q
    ||||||| |||| ||||||||||||||| | ||||||||| | ||  |||| ||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  22689414 atgccacttcaataatacatggtcttcactattgatcaacatgggccgtggttgcaaatttttgaacctctcccacacccaaacttgaaccaagtaaaag 22689513  T
Q  159 ggtgattgcagattaacatcaaaaggaaattttttgaaatcaacaannnnnnncttaaacaaactcaaatcgttatataagctagccaaaacagtaggtg 258  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||       |||||||||||||||||| ||||||| |||||||||||||| |||||    
T  22689514 ggtgattgcagattaacatcaacaggacattttttgaaatcaacaatttgtttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtg 22689613  T
Q  259 ccaaagcaatagtattacctct 280  Q
    |||||||||||||||| |||||    
T  22689614 ccaaagcaatagtattgcctct 22689635  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 11544498 - 11544341
Alignment:
Q  8 tgaatcaaatgccaacctcacatggttaattttcaagggcgcttcaaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgt 107  Q
    |||||| ||||||||||||||||  | ||||||||||||   || ||||  ||||||||||| || |||||||||| |||||||||||||||| |||| |    
T  11544498 tgaatctaatgccaacctcacattatcaattttcaaggg---tttaaccaaatgccacctcatcagtacatggtctccattgttgatcaacttgggtttt 11544402  T
Q  108 ggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtgattgca 168  Q
    || ||||||||| |||| |||||||| ||||||||||| |||||||||| |||||||||||    
T  11544401 ggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtgattgca 11544341  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 22651805 - 22651873
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||||||| | ||||| ||||| | ||||||||||||||  ||||| |||||||||| ||| |||||    
T  22651805 cttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctct 22651873  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 9815420 - 9815288
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||| ||||| ||||||| | ||||| | |  ||||||||| | |||| |||||| ||||||  ||| |||||||||||||||| ||| ||||||    
T  9815420 aaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttctggctgtaaattttggaacctctcccacacccaaatttgaaccaag 9815321  T
Q  153 taaaagggtgattgcagattaacatcaaaagga 185  Q
    |||||||||||||| ||| |||| || ||||||    
T  9815320 taaaagggtgattgaagagtaacttctaaagga 9815288  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 26354664 - 26354791
Alignment:
Q  58 tatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaa 157  Q
    ||||||| || ||||||| | ||||| ||  |||||||||| | ||||| || || || ||| |||| |||||||||||||||| ||| |||||||||||    
T  26354664 tatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaattttttgaacctctcccacacccaaatttgaaccaagtaaaa 26354763  T
Q  158 gggtgattgcagattaacatcaaaagga 185  Q
     |||||||| ||| |||| || ||||||    
T  26354764 cggtgattgaagagtaacttctaaagga 26354791  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 9815240 - 9815172
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||||||||| ||||||||||| |  ||||| |||||||  |||||||||||||||| ||| |||||    
T  9815240 cttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctct 9815172  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 26354839 - 26354907
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    ||||||||  || ||||| ||||||| |||||| |||||||  |||||||||||||||| ||| |||||    
T  26354839 cttaaacacgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcctct 26354907  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 6398613 - 6398537
Alignment:
Q  87 ttgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaagtaaaagggtga 163  Q
    |||||||||||| |  ||||||| ||||| ||| |||| |||||||||||| ||||||| |||| |||||| |||||    
T  6398613 ttgttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtga 6398537  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 1717417 - 1717349
Alignment:
Q  212 cttaaacaaactcaaatcgttatataagctagccaaaacagtaggtgccaaagcaatagtattacctct 280  Q
    |||||||||| | ||||| ||||||| |||||| |||||||  |||||||||||||||| ||| |||||    
T  1717417 cttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctct 1717349  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 12497591 - 12497482
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||||||||||| ||| |||   | |||||||||| |  ||||||| ||||| |||  ||  |||||||| |||||||| || ||||||    
T  12497591 aaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagttgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaag 12497493  T
Q  153 taaaagggtga 163  Q
    ||||| |||||    
T  12497492 taaaaaggtga 12497482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 12521456 - 12521347
Alignment:
Q  53 aaccttatgccacctcaacaatacatggtcttcattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaaacttgtaccaag 152  Q
    ||||||||||||||||||||||| ||| |||   | |||||||||| |  ||||||| ||||| |||  ||  |||||||| |||||||| || ||||||    
T  12521456 aaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagttgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaag 12521358  T
Q  153 taaaagggtga 163  Q
    ||||| |||||    
T  12521357 taaaaaggtga 12521347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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