View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_23 (Length: 275)
Name: NF1957_low_23
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 33221454 - 33221698
Alignment:
| Q |
18 |
caaaatctacaga--ctgtaaataaacagatgaagggaagcgttattcttctgcaannnnnnnncattaatagctaaatgagagtggaaacttaataatg |
115 |
Q |
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| T |
33221454 |
caaaatctacagagactgtaaataaacagatgaagggaagcgttattcttccgcaattttttttcattaatagctaaatgagagtggaaactgaataatg |
33221553 |
T |
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| Q |
116 |
ttgaacctataactagttgcatgcatgcatatgggatgtataaattttcatagnnnnnnntatgtacatatagtaagagatgaagaaggatttgccttgt |
215 |
Q |
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| T |
33221554 |
ttgaacctataactagttgcatgcatgcatatgggatgtataaattttcatagaaaaaaatatgtacatatagtaagagatgaagaaggatttgccttgt |
33221653 |
T |
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| Q |
216 |
aattttgcaacttaaaagagaaaataagtgttattcttctgcaat |
260 |
Q |
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| T |
33221654 |
aattttgcaacttaaaagaaaaaataagtgttattcttctgcaat |
33221698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 33229619 - 33229690
Alignment:
| Q |
187 |
agtaagagatgaagaaggatttgccttgtaattttgcaacttaaaagagaaaataagtgttattcttctgcaa |
259 |
Q |
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| T |
33229619 |
agtaagagatgaagaagaatt-gccttgtaatttcctacctcaaaagagaagataagtgttattcttcagcaa |
33229690 |
T |
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